Gene PSPTO_5269 details

Gene Information

• Locus tag: PSPTO_5269
• Symbol: betT
• ID: 1186954
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 5989584
• End bp: 5991578
• Gene Length: 1995 bp
• Protein Length: 664 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637396588
• Product: choline transporter
• Protein accession: NP_795000
• Protein GI: 28872381
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1292] Choline-glycine betaine transporter
• TIGRFAM ID: [TIGR00842] choline/carnitine/betaine transport

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTTCTC CGAGTACTTC TTCAAGTGGC ACCGTCCGCA TGAACGCTCC AGTGTTCTAC 
TTCGCTGCGA GTTTCATCCT GATTTTCGGC ATCATTGTCA TCGCCTTCCC GCAAGCCAGC 
GGCGCCTGGC TGCTGGCCGC GCAGAACTGG GCTGCCAACA CGGTCGGCTG GTATTACATG 
ATGGTCATGA CCCTGTACCT GGTCTTCGTG GTGGTCACCG CCTTGTCGGG CTTCGGCAAG 
ATCAAGCTCG GTGCCGACCA CGACGAACCC GAGTTCAGTT ACCTGTCATG GGCCGGCATG 
CTGTTCGCCG CCGGGATCAG CATCACGCTG TTCTTCTTCT GCGTTTCAGA GCCGCTGACG 
CATTTGCTGC AACCGCCGCA GGGTGAAGGG GGCACGGCTG AGGCTGCGCG CCAAGGCATG 
CAACTGCTGT TTCTGCACTG GGGCCTGCAT GGCTGGGGCG TGTTTGCTTT TGTCGGTATG 
GCGCTGGCCT ACTTCGCCTA TCGCCACAAC CTGCCGCTGG CCCTGCGTTC GGCGCTGTAC 
CCGCTGATCG GCAAGCGCAT CAACGGCCCT ATCGGCTACG CCGTCGATGG CTTCGGCATC 
ATCGCGACCA TCTTCGGGCT TGGTGCAGAC ATGGGTTTCG GCGTGCTGCA CCTTAACTCC 
GGTCTCGATT ACCTGTTTGG CGTACCGCAC ACTCAATGGA TTCAGGTCGG CCTGATCACC 
CTGATGATGG GCGCGGCGAT TCTGGTTGCC ATCGCCGGTG TCGACAAGGG CGTGCGCGTG 
ATGTCCGACA TCAACATGCT GCTGGCCTGT GCGCTGCTGC TGTTCGTGTT GTTTGCAGGT 
CCCACTCAGC ATTTGCTCAA CACGCTGGTG CAGAATATCG GTGACTACCT GGGCGCGCTA 
CCGAGCAAGA GTTTCGACGT CTACGCCTAT AACAAGCCGA GTGACTGGCT GGGCGGCTGG 
ACCGTGTTCT ATTGGGCCTG GTGGATTGCC TGGGCACCGT TCGTGGGCCT GTTCATCGCG 
CGTATTTCCC GTGGCCGCAC CATCCGTGAA TTCGTTTTCG GTGTGCTGCT GATTCCGCTG 
GGCTTCACCC TGGCGTGGAT GTCGATCTTC GGCAACAGCG CCATCGATCA GGTGCTCAAC 
CACGGCATGG CTGCGCTGGG CCAGTCGGCT ATCGATGACC CGTCGATGAC GCTGTACCTG 
CTGCTGGAAA CCTACCCGTG GAGCAAGACG GTCATCGCGG TCACGGTGTT CATCAGCTTC 
GTGTTCTTCG TTACGTCGGC CGATTCGGGC ACTGTGGTGC TGTCGACGCT CTCGGCCAAA 
GGCGGCAACC CCGACGAAGA CGGCCCGAAA TGGCTGCGCG TGTTCTGGGG TGTGGCGACG 
GCGCTGATCA CCAGCGGCCT GTTGTTCTCG GGCAGTATCG ATGCGTTGAA ATCGGCGGTG 
GTGCTGACCT CGCTGCCGTT TTCGCTGATC CTGCTGCTGA TGATGTGGGG CCTGCACAAG 
GCGTTCGTCA TGGAATCCCA GCGCCAGATT GCGCAGCTGT ATTCGCTGGC GCCAGTTTCC 
GGCTCACGAC GTGGCGGCTG GCGTCAGCGC CTGAGCCAGG CCGTGCATTA CCCGTCGCGA 
GACGAGGTGT ATCGCTTCCT CGACCAGACC GTGCGTCCGG CCATTGATGA AGTAACGGCG 
GTGTTTGTCG AAAAGGGCTT GAACGTGGTC AACGTTCCCG ACCCGTCCAA CGACTCGGTG 
ACCCTGGAAA TCGGCCACGG GGAAGAGCGC CCGTTCATCT ACCAGGTGCA GATGAAAGGC 
TTCTTCACCC CGTCGTTTGC GCGTGGCGGC ATGGGTTCCA AACAGTTGAA CAACCGCCGC 
TACTACCGCG CCGAGGTTCA CCTCAGCGAA GGCAGTCAGG ACTACGACCT GGTGGGCTAC 
ACCAAGGAGC AAGTCATCAA CGACGTGCTC GACCAGTACG AACGGCATAT GCAGTTTCTG 
CATCTGGTGC GTTGA 

 

Protein sequence

MSSPSTSSSG TVRMNAPVFY FAASFILIFG IIVIAFPQAS GAWLLAAQNW AANTVGWYYM 
MVMTLYLVFV VVTALSGFGK IKLGADHDEP EFSYLSWAGM LFAAGISITL FFFCVSEPLT 
HLLQPPQGEG GTAEAARQGM QLLFLHWGLH GWGVFAFVGM ALAYFAYRHN LPLALRSALY 
PLIGKRINGP IGYAVDGFGI IATIFGLGAD MGFGVLHLNS GLDYLFGVPH TQWIQVGLIT 
LMMGAAILVA IAGVDKGVRV MSDINMLLAC ALLLFVLFAG PTQHLLNTLV QNIGDYLGAL 
PSKSFDVYAY NKPSDWLGGW TVFYWAWWIA WAPFVGLFIA RISRGRTIRE FVFGVLLIPL 
GFTLAWMSIF GNSAIDQVLN HGMAALGQSA IDDPSMTLYL LLETYPWSKT VIAVTVFISF 
VFFVTSADSG TVVLSTLSAK GGNPDEDGPK WLRVFWGVAT ALITSGLLFS GSIDALKSAV 
VLTSLPFSLI LLLMMWGLHK AFVMESQRQI AQLYSLAPVS GSRRGGWRQR LSQAVHYPSR 
DEVYRFLDQT VRPAIDEVTA VFVEKGLNVV NVPDPSNDSV TLEIGHGEER PFIYQVQMKG 
FFTPSFARGG MGSKQLNNRR YYRAEVHLSE GSQDYDLVGY TKEQVINDVL DQYERHMQFL 
HLVR