| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5221 |
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| Symbol | ubiF |
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| ID | 1186906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5943909 |
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| End bp | 5945138 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637396540 |
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| Product | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase |
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| Protein accession | NP_794952 |
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| Protein GI | 28872333 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0654] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
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| TIGRFAM ID | [TIGR01988] Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAACGC GTGCAGATGT GTTGATTGTC GGGGCCGGAA TGGTCGGCAG TGCTCTTGCG
CTGGCCTTGC AGGGCAGTGG CCTTGATGTG CTGGTGGTCG ACGGCGGGCC GCTGAGCGTC
AAACCCTTTG ACCCGCAATC GACTTTCGAG CCACGGGTCA GTGCCTTGTC AGCGGCCAGC
CAGCGCATTC TGCAGCGGCT TGGCGTGTGG GATGGCATCG CGTCGCGACG TACCAGCCCT
TACGCGCACA TGCACGTCTG GGATGGCAGC GGCACCGGGC AGATCCACTT CTCGGCCTCT
AGTGTGCATG CCGACGTGCT GGGCCATATC GTCGAGAACC GAGTGGTGCA GGATGCGTTG
CTCGACCGTT TGCATGACAG CGACATCGGC CTGCTGGCCA ACGCGCGGCT AGAGCAGATG
CGTCACTCCG GCGATGACTG GTTGCTGACG CTGGCGGACG GTCGTTTGCT GCGTGCGCCG
CTGGTGGTTG CCGCCGACGG TGCTAACTCG GCAGTACGCC GCCTGACCGA AACGCCGACG
CGCGAGTGGG ATTACCTGCA CCACGCCATC GTCACCAGCG TGCGCACGGC CGATTCCCAC
AAGAAAACCG CCTGGCAGCG TTTCACGGAT GACGGCCCGC TGGCGTTTCT GCCGCTGGAC
CGTGAGGGCG AGCACTGGTG TTCCATTGTC TGGTCGGTCA CGCCAGCAGA AGCCGAGCGT
TTGATGGTGC TGGAAGATGA TCTGTTCTGC CGTGAGCTGG AGCAGGCGTT CGAGGGCCGG
CTGGGCCAGG TCTTGTCTGC CGACGCGCGC CTGTGCGTGC CGCTGCGCCA GCGTCACGCC
AAGCGCTACG TCGCCAATGG CCTCGCGCTG ATTGGGGACG CGGCGCACAC CATTCACCCG
TTGGCCGGGC AGGGCGTGAA CCTGGGTTTT CTGGATGCTG CGGTGCTGGC GCAAGTGCTG
ACCCACGCAG CGCAGCGTGG CGAGCGCGTG GCAGACCTGC GCGTGCTGGG CCGCTACGAG
CGTCGCCGCA TGCCGCACAA CCTGGCATTG ATGGCGGCGA TGGAGGGCTT TGAACGCCTG
TTCCAGGCCA ACCCGCTGCC ACTGCGCTGG CTGCGTAATA CCGGCCTGAA AATGGTCAAC
CAAATGCCCG AGGCCAAGGC TCTGTTCGTG CGCGAAGCCT TAGGTTTGTC GGGCGATCTG
CCGGAGTTGG CACGGCTTGA CGCTCGTTAG
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| Protein sequence | METRADVLIV GAGMVGSALA LALQGSGLDV LVVDGGPLSV KPFDPQSTFE PRVSALSAAS
QRILQRLGVW DGIASRRTSP YAHMHVWDGS GTGQIHFSAS SVHADVLGHI VENRVVQDAL
LDRLHDSDIG LLANARLEQM RHSGDDWLLT LADGRLLRAP LVVAADGANS AVRRLTETPT
REWDYLHHAI VTSVRTADSH KKTAWQRFTD DGPLAFLPLD REGEHWCSIV WSVTPAEAER
LMVLEDDLFC RELEQAFEGR LGQVLSADAR LCVPLRQRHA KRYVANGLAL IGDAAHTIHP
LAGQGVNLGF LDAAVLAQVL THAAQRGERV ADLRVLGRYE RRRMPHNLAL MAAMEGFERL
FQANPLPLRW LRNTGLKMVN QMPEAKALFV REALGLSGDL PELARLDAR
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