Gene PSPTO_5204 details

Gene Information

• Locus tag: PSPTO_5204
• ID: 1186889
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 5924253
• End bp: 5926277
• Gene Length: 2025 bp
• Protein Length: 674 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637396523
• Product: EF hand domain protein
• Protein accession: NP_794935
• Protein GI: 28872316
• COG category: [R] General function prediction only
• COG ID: [COG3179] Predicted chitinase

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAGCAGG GGGCAACCAA AAAACGGGTC GAGGGGGCGG AGGTCTGGTT CGCTTATTTG 
AAAAACGGCG AACCCTACAA AAACTCAGTC CCTAAGCGCA TCTGGCTCGC TGACGATGTG 
CCTGAGCGAG CAAGACCCAA TTACTGGCAA GGTAAGGTCA AAGCCTCAGT CGTGAATAAG 
TTGCCGCTGT ACGATGATCC TGCCAGCCCT ACAAATGGCC AGCCTGCAGG CGCCCGGAAG 
GGGACTCTGG AGCTGGTCAT GAACAGCGTC ATCGAGTTTA ACTCTTCGGA AGTCGTCAAC 
CTGGCGCTGG ATGGCAAGCT GCAGCGGATG GCCAAGTGCA CAATGCTGAG TGGCGGCCTG 
CGGGGTCATG GTGCGGTTCC CCCCAGCTTT TGGGCATGTG TTGAAAATGA CCCTGCTAAT 
AAAGTATTGA AGTGGGACTC GGTAACGCCG ACCAGTTTTG ATACGGTCGT TATGACGAGC 
ACCGGAGTGA AGGCGGGCGA TCCAATTGGC TATCTTGGAC AAACCGAAAA TCTCACCGGT 
GAAAATGGCG GCGTCAGCAG CAAATACCAG GTTCACGTCG AAATCTTCAC AGCCGATGCT 
GAGGTTAAAG ACTTCCTCAA GAACACCGCG GGTTTGAAGA TTGGGAAGCA ATACCTGCAC 
CTTGCAAGCG GGGCTGTACT CAAGCAAAAA GCGCCCGCTA CAGGCACCAC AGCACTCAAG 
CAAGACCATG CGGTTGACTT GGCTAAAGCC ACGGTTGTCA AAGAAGGCTT AGATGACTGG 
TATGAGGTCA GCGTGATCGA GGACGATCAG CCTGTAGCCG GCTTGATAAA AAAAGCCACT 
GCGCCAGTCA TCACACAGCA CGATTGGGAG AAATTGGGCT TTCAGATCGT GGAGGAGAAC 
AACGCAGCAG CCGATGGCTT CCTGGACCCG GAAGACATGC CTCCTTTTTT CAAAGAGTTG 
TTTGCGAAAG TAGATACGAA CCATGATGGG GATGTTTCTC CCGGCGAACT CGCGGAAGCG 
TTAAAAAATA TCGACACCAG GGATCAGTGG GCAAAGCTGA TCGCTCATCA CCCAACCGAG 
TGGAAGTACA AGGCAGACGC AGCCAAGTGG AGCAGGCTGG ATAAGCTGCT TGAGACATCG 
CCCAAGACGC TTAAGCACGA GAAAGAGCGA ATTAACAAAT ATGTTTTTTG GGAGGAGTTG 
ACAGGTAAGG CATTGATTAG TACTGATGCC GTTTGGCATT TTCATCCAGT TGAGTTCTTA 
AAGAATATAA GGGCAAAAGC TGGTTTTGTA TTCACGCTCG AAATGATGCA AAAAATCTAT 
CCATTGATAG AGCCTTCTAG GCAATCAGAT CTGCAGGAAA TCATAGATGA GTTAAATGCT 
CATATCGATT TCTTCCGACT GGATACCCCG CTAAGAAGGA GCCATTTCTT CGCGCAGGTC 
ATGCAGGAGA CAGGTGCCGC TCTCAGCGTC GAAGAAGGAT TTCTCTGGAA AGCGTCATCC 
CTCATTGGGT CTTTCTCATA TTTTCGTAAT AATCCTGCTG CAGCACGTGC ACATGGTTAC 
GATACAACCA AACCAATAAA AGCCGATGGA ACACGAGTAA ATCAGGCAGA TTATGAAGCC 
GTTGCTAATG GTGCTTATGG TGGGCGTGCA GAACTGGGGA ATGGGGACTA CGCAAGCGGA 
GATGGTTGGA AATTCCGAGG TAGAGGGCTC AAACAGCTCA CTGGTAGGGC TCATTACAGA 
AACTTTACAA AGTGGTGCTC GACCAATTCA GTTGAGTGGC CAAGTGAGCT TCATGACTTT 
GAGATAAATC CTGAACTGTT GGTTCAGATG AAATACGCGG TACGCTCCGC TGCATTTTTC 
TGGATAGATA ATGAGCTTTA TCGAAGGGCT GATAACGGAG CTAATGACTC AACAGTTCAG 
TCAATAACCG ATGTGGTAAA TTATAATACC GATAGCAGGC CAGCACGAAT AAGCAATTTC 
AAGAAAATTT GGCAGCAGGG ACTATTTAAT GAGATCATTC TATGA 

 

Protein sequence

MKQGATKKRV EGAEVWFAYL KNGEPYKNSV PKRIWLADDV PERARPNYWQ GKVKASVVNK 
LPLYDDPASP TNGQPAGARK GTLELVMNSV IEFNSSEVVN LALDGKLQRM AKCTMLSGGL 
RGHGAVPPSF WACVENDPAN KVLKWDSVTP TSFDTVVMTS TGVKAGDPIG YLGQTENLTG 
ENGGVSSKYQ VHVEIFTADA EVKDFLKNTA GLKIGKQYLH LASGAVLKQK APATGTTALK 
QDHAVDLAKA TVVKEGLDDW YEVSVIEDDQ PVAGLIKKAT APVITQHDWE KLGFQIVEEN 
NAAADGFLDP EDMPPFFKEL FAKVDTNHDG DVSPGELAEA LKNIDTRDQW AKLIAHHPTE 
WKYKADAAKW SRLDKLLETS PKTLKHEKER INKYVFWEEL TGKALISTDA VWHFHPVEFL 
KNIRAKAGFV FTLEMMQKIY PLIEPSRQSD LQEIIDELNA HIDFFRLDTP LRRSHFFAQV 
MQETGAALSV EEGFLWKASS LIGSFSYFRN NPAAARAHGY DTTKPIKADG TRVNQADYEA 
VANGAYGGRA ELGNGDYASG DGWKFRGRGL KQLTGRAHYR NFTKWCSTNS VEWPSELHDF 
EINPELLVQM KYAVRSAAFF WIDNELYRRA DNGANDSTVQ SITDVVNYNT DSRPARISNF 
KKIWQQGLFN EIIL