| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5193 |
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| Symbol | |
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| ID | 1186878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5911426 |
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| End bp | 5912544 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637396512 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | NP_794924 |
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| Protein GI | 28872305 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGTTC GTATTTCAAG ACTGGTTACA TTCGGTCTGG CCGCTGCCTT GGCGGCGCTG
GCAGGCTGTG GCGAGGAGAA ACCGCTCGCT CCGGAACTGC CACGGGTTTA TGTGCAATCG
GTGAAAAGCG CCGACTTCGC GGCCAGTGTC GCCTTGACCG GCGACGTTCA GGCGCGGGTG
CAGACTCGTC TGTCTTTCCG GGTGAATGGC AAGATCATTC AGCGCAACGT GGATGTCGGC
GACCGCGTAA CGGCACGGCA GGTGCTGGCC CGTCTTGACC CCAGGGATTT GCAGATCAAT
GTCGATTCGG CTGCTGCCTC CGTGGCCGCC GAGCAGGCTC GCGTCAGTCA GGCCAGCGCT
GCGTTCGTGC GCCAGCAAAA GCTGTTGCCC AAGGGTTACA CCAGCCGCAG CGAATATGAC
TCCGCACAGG CGGCCGTGCG CGGCAGCGAA AGTTCGTTGA AAGCCGCGCA GGCGCAATTG
GCCAATGCCC GTGAACAGTT GAGTTACACC GCGCTGGTCG CGGATGCGCC GGGGGTGATT
ACGGCGCGTC AGGCTGAGGT CGGGCAGGTG GTTCAGGCGA CGGTGCCTAT TTTTGACCTG
GCGCGTGATG GTGAGCGCGA CGCGGTGTTC AATGTTTACG AATCGCTGTT CGTCCAGCCG
CCCACCGATC AAGCCGTACA GGTCACGCTG CTCGACAATC CGGCTATCAA GGTCAGCGGC
AAGGTGCGCG AAGTGACCCC GGCGGTTTCG GCGCAAACCG GGACGTTGCA GGTCAAGATC
GCGCTGGACC CGCTGCCGGA AGGCATGGAC CTCGGTTCGG TGGTCAGTGT GGCGCTGAGC
GCGCCGGCCA ATGCCAGTGT CGAGTTGCCG TGGTCGGCGC TGACCAAGGA CCTCGGCGAG
CACTTGGGCA AACCCGCTGT GTGGGTGGTC GACGAGCAGG GCAAGGTCAA TCTGCGCAAG
GTGACTGTCA CCCGTTACCT GACCTCCAAA GTCATCATCG GCGATGGGCT GAAAGGTGGA
GAGAACGTTG TGGTCGCAGG CGGACAGTTG TTACACCCTG ATATGCAGGT CGAGATTGCC
GAACAACCCA AACAGCAGAA TACGCAGGTG CAGCCATGA
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| Protein sequence | MPVRISRLVT FGLAAALAAL AGCGEEKPLA PELPRVYVQS VKSADFAASV ALTGDVQARV
QTRLSFRVNG KIIQRNVDVG DRVTARQVLA RLDPRDLQIN VDSAAASVAA EQARVSQASA
AFVRQQKLLP KGYTSRSEYD SAQAAVRGSE SSLKAAQAQL ANAREQLSYT ALVADAPGVI
TARQAEVGQV VQATVPIFDL ARDGERDAVF NVYESLFVQP PTDQAVQVTL LDNPAIKVSG
KVREVTPAVS AQTGTLQVKI ALDPLPEGMD LGSVVSVALS APANASVELP WSALTKDLGE
HLGKPAVWVV DEQGKVNLRK VTVTRYLTSK VIIGDGLKGG ENVVVAGGQL LHPDMQVEIA
EQPKQQNTQV QP
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