| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5192 |
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| Symbol | |
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| ID | 1186877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5910359 |
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| End bp | 5911429 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637396511 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | NP_794923 |
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| Protein GI | 28872304 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCGTA TGTCATGCCT GTTGCTGGGC GGCCTTCTGC TGAGTGGCTG TGGCAAGGAA
GAAGCACCGC CCGAGCCCAT ACGACCGGTA GTGTTCGTTG AAGCACAGCC CGAATCGATG
CAGGATTTCG GGCGTTTCGC TGGCAATATC CAGGCGCGTT ATCAGAGCGT GCTGGGTTTT
CGAGTGGCAG GGCGCATTGC CCGACGCAAT GTGGACGTCG GCAGCGAAGT GAAGAAAGGC
GATTTGCTCG CAACCCTCGA TCCGACCGAT CAGCAGAATA ACGTGCGCGG TCGTCAAGGC
GATCTGGCCA ATGTTCAGGC GCAGTGGATC AACGCGCAGG CCAACGCCCG TCGTCAGCAA
GAACTGTTCG ACCGTGGTGT CGGTGCCCAG GCGCAGCTGG ACGTCGCGCT CACTGACCTC
AAGACTGCCA GTTCTTCACT GGAGCAGGCC AAGGCTGCCG AGCAGCAGGC GCGCGATCAA
TTGAGTTACA GCGAACTACA CAGCGATCAC GATGCGGTAG TGACCGAATG GAAAGTCGAG
GCTGGGCAGG TGGTGACCGC CGGGCAGGAA GTCGTTACCC TGGCGCGCCC GGATATCAAG
GAAGCAGTGA TTGATCTGCC CGACGCACTG GCCGACCAGT TGCCCCGCGA CGTGGTTTTC
ACCGTGGCCA GCCAGTTGAA TCCGGACATC AACACCACCG CGACCATTCG CGAAATCGAA
CCCCAGGCCG ACCGCACAAC ACGTACTCGC CGTACGCGCC TGTCACTGGC CGAAACGCCA
GTGGCGTTCC GGCTGGGCAC TGCCATCAGC GTGACGCTCA GCTCGACCAT CACGGCGCGC
ATGCGTTTAC CGATCAATGC CTTGCAGGAG GTCGATGGCA AACGCCAGAT CTGGATCGTC
GACCCGCAGA GCCAGACGGT GAACCCCAGA GCGGTGAATA TTACCAGCCG TGACAACGAC
AGCTTTGTGC TGGCAGACGG TGTCAAAGCT GGTGAAAAAG TCGTGAGCGC AGGCGTCAAC
AGCCTCAAGC CGGGTCAGAA AGTCAAAGTC GATGAGGAAA GCCCGCGATG A
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| Protein sequence | MKRMSCLLLG GLLLSGCGKE EAPPEPIRPV VFVEAQPESM QDFGRFAGNI QARYQSVLGF
RVAGRIARRN VDVGSEVKKG DLLATLDPTD QQNNVRGRQG DLANVQAQWI NAQANARRQQ
ELFDRGVGAQ AQLDVALTDL KTASSSLEQA KAAEQQARDQ LSYSELHSDH DAVVTEWKVE
AGQVVTAGQE VVTLARPDIK EAVIDLPDAL ADQLPRDVVF TVASQLNPDI NTTATIREIE
PQADRTTRTR RTRLSLAETP VAFRLGTAIS VTLSSTITAR MRLPINALQE VDGKRQIWIV
DPQSQTVNPR AVNITSRDND SFVLADGVKA GEKVVSAGVN SLKPGQKVKV DEESPR
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