Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5174 |
Symbol | nhaA-2 |
ID | 1186859 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5890278 |
End bp | 5891453 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637396493 |
Product | sodium-proton antiporter NhaA |
Protein accession | NP_794905 |
Protein GI | 28872286 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3004] Na+/H+ antiporter |
TIGRFAM ID | [TIGR00773] Na+/H+ antiporter NhaA |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTCAAG TCCCAAACCG GGAAACGCCC CGTGGCGTTG CCATTCTTAC CCGTTTTCTC GCCTCCGAAT CAGCGGGCGG CATCGTGCTG ATGGCCGCAG CGCTGGCCGC ACTGATCGTC GCCAACTCGC CCTTGTCCGC GGGCTACTTC TCGACGCTGC ACAGCGTCTG GCTGGGGCTG TCGGTCGAGT TGTGGATCAA CGACGGGCTG ATGGCGATCT TCTTTCTGAT GGTCGGTTTG GAGATCAAGC GCGAAGTGCT GGCCGGTGGC CTGGCAACCT GGGGGCAACG CGCCCTGCCC GGCTTTGCAG CCCTTGGCGG CATGCTGGTG CCCGCGCTGA TCTACATCGC GATCAACTGG GGCAACCCGC AGACCCTGAG CGGCTGGGCG ATCCCGGCGG CCACCGACAT CGCCTTCGCC CTCGGCGTGC TGTCGCTGCT GGGCAATCGC GTGCCGACCT CGCTAAAAGT CTTCCTCGCC GCGCTGGCGA TTCTCGATGA CCTGGGGGCT GTGACCATCA TCGCGTTTTT CTACAGCTCC GGGCTTAATC TGCCGATGCT GGCCGCCGCG TTCGTGACCC TCGCCGTGTT GGTCGCGCTG AACCGCCTGA ACATCCGTCG TCTGCTGCCG TATTTGCTGC TCGGTGCGCT GCTGTGGTTC TTCGTCCTGC AGTCGGGCGT GCACGCGACG CTGGCCGGTG TCGCGCTGGC GCTGTGTATC CCGATGGGCA AGCCCGAGGA AGAAGCACGC TCGCCGCTGC TGTTGCTGGA AGAAAAAATG CATTACTGGG TCGCGTTTGC CGTGGTACCG ATCTTTGGCT TTGCCAATGC CGGCGTATCG CTTTCCGGCA TTACCCTGGC AAACCTGATC GACCCGGTGC CGCTGGGCGT TGCATTGGGC CTGTTTGTGG GCAAGCAGAT CGGCGTGTTT CTCGCCGCAG TGCTGGCCAT CCGCGCAGGG CTCGCCGTGC TGCCGGAGGG CAGCAACTGG GTGCAGCTGT ACGGCGTGGC GATCCTGTGT GGCATCGGCT TCACCATGAG CCTGTTCATC GGCAACCTGG CATTCCCCGG CTCGCAGCAC CTGATCGACG AAGTCAAAGT CGGTGTGCTG ATCGGCTCGG GGCTTGCGGC GGTTGCCGGC ATAGTGCTGC TGCGCAGCCG TTTCAGCCGG CACTGA
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Protein sequence | MTQVPNRETP RGVAILTRFL ASESAGGIVL MAAALAALIV ANSPLSAGYF STLHSVWLGL SVELWINDGL MAIFFLMVGL EIKREVLAGG LATWGQRALP GFAALGGMLV PALIYIAINW GNPQTLSGWA IPAATDIAFA LGVLSLLGNR VPTSLKVFLA ALAILDDLGA VTIIAFFYSS GLNLPMLAAA FVTLAVLVAL NRLNIRRLLP YLLLGALLWF FVLQSGVHAT LAGVALALCI PMGKPEEEAR SPLLLLEEKM HYWVAFAVVP IFGFANAGVS LSGITLANLI DPVPLGVALG LFVGKQIGVF LAAVLAIRAG LAVLPEGSNW VQLYGVAILC GIGFTMSLFI GNLAFPGSQH LIDEVKVGVL IGSGLAAVAG IVLLRSRFSR H
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