| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5158 |
|---|
| Symbol | |
|---|
| ID | 1186843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 5866384 |
|---|
| End bp | 5867091 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637396477 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_794889 |
|---|
| Protein GI | 28872270 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACCTGC TGTTACTTGA GGAGGCCGAC TTTATCGCGG CCGACCGGGT GGTTCTGCGC
GATCGGCGCC TCAAGCACAT GCAGGAGGTG CATCGCGCAG AGGTTGGCGA CAGCTTGCGC
GTGGGCCGTG TCAACGGCTT GCTGGGCAGT GCCGAACTGC TGCGTCTGGA GCCTCACGAG
GCCGAGTTGC GTGTTTCGCT GACTGCCGAG CCGCCGGCCA AGCTGCCGCT GACCCTGTTG
CTGGCGCTGC CTCGTCCCAA AATGCTGCTC CGGGTGTTTC AGACCATTGC GACCATGGGC
GTGCCGAAAG TCATTCTGCT GAACAGCTAC CGGGTCGAAA AAAGCTTCTG GCAGACACCG
TTTCTGGAGC CCGAAGCCAT TCGCGAGCAG TTGATTCTGG GGTTGGAACA GGCGCGCGAC
TGTGTACTGC CCGAGATCGT GATCGAGAAA CGTTTCAAGC CTTTCGTTGA AGACCGCCTG
CCGCACATAG CTGCCGACAC ACTTGGCCTG GTCGGCCATC CTGGCGACTT CCCTGCCTGC
CCGCGCGCGG TCACCCAGCC TGTCACGCTG GCGATCGGCC CCGAAGGCGG CTGGATCCCG
TATGAAGTCG ACCTGTTGCG CCAATCCGGT TTGCAGCCTG TGCAGCTGGG CGAGCGCATC
CTGCGCGTCG AAACGGCAGT AACAGCCCTT CTGGCTCGTC TGTTCTAG
|
|---|
| Protein sequence | MNLLLLEEAD FIAADRVVLR DRRLKHMQEV HRAEVGDSLR VGRVNGLLGS AELLRLEPHE
AELRVSLTAE PPAKLPLTLL LALPRPKMLL RVFQTIATMG VPKVILLNSY RVEKSFWQTP
FLEPEAIREQ LILGLEQARD CVLPEIVIEK RFKPFVEDRL PHIAADTLGL VGHPGDFPAC
PRAVTQPVTL AIGPEGGWIP YEVDLLRQSG LQPVQLGERI LRVETAVTAL LARLF
|
|---|
| |