Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5133 |
Symbol | |
ID | 1186818 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5840698 |
End bp | 5843142 |
Gene Length | 2445 bp |
Protein Length | 814 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637396453 |
Product | penicillin-binding protein |
Protein accession | NP_794865 |
Protein GI | 28872246 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0554788 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGATACGCC TGCTGAAGTT TTTCTGGTGG TCCCTCGTAG CGGTATTCTG CTCGCTGTTA CTCGGCCTGA GCGGCGCGTT TCTGTATCTG AGCCCGACCC TGCCCTCTGT CGAAGCGCTG CGAAGCATTC AACTGCAAAT TCCCCTGCGC GTGTTCAGCA GCGACGGCAA GCTGATTGCC GAGTTCGGCG AGATGCGCCG GACCCCGATT CGCTTTGCCG AAATCCCGCC CAACTTCATC AACGCGCTGT TATCGGCCGA AGACGACAAC TTCGCCAACC ACTATGGCGT TGACCCCAGC AGCCTGATGC GCGCCGCCAC CCAATTGGTG AAGAGCGGTC ATATTCAGTC AGGCGGCAGT ACCATCACCA TGCAGGTCGC GAAAAACTTT TTCCTGACCA GCGAACGAAG CTTTTCGCGC AAAACCACAG AGATCCTTCT CGCCTTGCAA ATCGAGCGCC AACTCACCAA AGACGAGATT CTCGAGCTGT ACGTGAACAA GATTTATCTG GGTAACCGCG CCTACGGCAT CGAGGCGGCG GCGCAAGTCT ACTATGGCAA ATCGATTCGC GATGTAAGCC TTGCGCAAAT GGCCATGATT GCCGGTTTGC CCAAGGCGCC GTCACGCTTC AACCCACTCG CCAATGCAAC CCGTGCCAAA GAGCGTCGCG ACTGGATTCT GGGGCGCATG TTCCGTCTGG GCAAAATCGA CCAGGCTGCG TATCAGGCAG CGCTCAACGA GCCGCTCAAC GCCAGTTATC ACGTACCGAC ACCGGAAGTG AACGCGCCGT ACATCGCTGA AATGGCCCGC GCCGAAATGG TCGGCCGTTA TGGCAGCGAG GCCTATACAG AGGGCTTCCG CGTCACGACC ACGGTGCCGA GCGACCTGCA GGAGCACGCC AACAAGTCCA TCCAGCAGGG CTTGATCGAC TACGATCAAC GCCACGGCTA TCGCGGGCCT GAAAGCCGCT TCCCGGGCAT GACCCGCGCT GGCTGGACGC AGGAGCTGAC CAAACAACGC ACGATCAACG GCCTGGAGCC GGCCATCGTC ACCCAGATCG ACAAGACCGG TCTGCGCGTT TTGACGCGCA ATGGCGAGAA GGAAGAAACC GTCGATTGGG CCAGCATGAA GTGGGCGCGT CCTTATCTGA ACACCAACAG CCTGGGCGCC AATCCCAAGC AGCCTGGCGA TGTTGCGAAG GTGGGTGATC TGGTTCGCCT GCTGCGTCAG GACGATGGCT CGCTGAAATT CAGTCAAATT CCCGTCGCGC AAAGCGCTCT GGTTTCCCTC GACCCGCAAA ATGGCGCCAT CCGCGCCCTG GTCGGCGGTT TTGCTTTCGA GCAGAGCAAC TACAACCGGG CCATGCAGGC CAAGCGTCAG CCGGGCTCCA GTTTCAAGCC ATTCATTTAC AGCGCCGCGC TGGATAACGG CTACACCGCC TCCAGCCTGG TGAACGACGC GCCGATCGTG TTCGTCGACG AGTATCTGGA CAAGGTATGG CGTCCGAAAA ATGACACCAA CACCTTCCTC GGCCCGATCC GCCTGCGCGA AGCGCTGTAC AAGTCGCGCA ACCTGGTTTC TATCCGCCTG CTGCAGGCGC TGGGCGTCGA TAGCACCATC GACTACATCA CTCGCTTCGG TTTTGCCAAG CAGGATCTGC CACGCAACCT GTCGCTGGCA CTCGGTACGG CCACACTGAC CCCGATGGAA ATCGCTACCG GCTGGGCGAC CTTTGCCAAC GGCGGTTACA AGGTCAGCCC TTACCTGATC CAGACCATCG AGAACCGTGA CGGCCAGACG CTGTTTGTCG CCAATCCGCC TAGCGTTCCG GTCAATGACG TGAATACGGC GCCCAATACG TCGACCTTTG CCGTGCATGA CAGCCCGAGC GTAGTCGCAA GCCCTCCGGG CTCACCGGCC CAACCGCAAG CGCCAGCCGT TGCCGAGCGC ATTGTGGATG GGCGCACCAC GTACATTCTG AACAGCATGC TGCAGGACGT GATCAAGCGC GGCACCGGGC GTCGCGCCTT GTCGATGAAC CGGCCGGACA TTGCAGGCAA GACCGGTACG ACCAACGATT CCAAGGATGC ATGGTTCTCC GGCTACAACG CGGATTACGT CACGACGGTG TGGAGCGGTT TCGATCAGCC TGAGAGCCTT GGCCGTCATG AATTTGGCGG TACGGTCTCG TTGCCGATCT GGATGGACTA CATGAGCGCC GCGCTCAAGG ACAAACCACC CCATCAGCAG GCCGAACCGT CTGGCATCCT CAGCCTGCGC GTCGACCCGC TGAGCGGCCG CGCGGCCACA CCGAGCACGC CAAACGCGTT CTTCGAGCTG TTCAAAAGCG AAGACACACC GCCAAGCGTC AACGAACTGG GCGGCGGTAG CGCACCCGGC AGCCCGCTGC CAGCAGACGA GTCCGCGCCG ATCGACTTAT TCTGA
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Protein sequence | MIRLLKFFWW SLVAVFCSLL LGLSGAFLYL SPTLPSVEAL RSIQLQIPLR VFSSDGKLIA EFGEMRRTPI RFAEIPPNFI NALLSAEDDN FANHYGVDPS SLMRAATQLV KSGHIQSGGS TITMQVAKNF FLTSERSFSR KTTEILLALQ IERQLTKDEI LELYVNKIYL GNRAYGIEAA AQVYYGKSIR DVSLAQMAMI AGLPKAPSRF NPLANATRAK ERRDWILGRM FRLGKIDQAA YQAALNEPLN ASYHVPTPEV NAPYIAEMAR AEMVGRYGSE AYTEGFRVTT TVPSDLQEHA NKSIQQGLID YDQRHGYRGP ESRFPGMTRA GWTQELTKQR TINGLEPAIV TQIDKTGLRV LTRNGEKEET VDWASMKWAR PYLNTNSLGA NPKQPGDVAK VGDLVRLLRQ DDGSLKFSQI PVAQSALVSL DPQNGAIRAL VGGFAFEQSN YNRAMQAKRQ PGSSFKPFIY SAALDNGYTA SSLVNDAPIV FVDEYLDKVW RPKNDTNTFL GPIRLREALY KSRNLVSIRL LQALGVDSTI DYITRFGFAK QDLPRNLSLA LGTATLTPME IATGWATFAN GGYKVSPYLI QTIENRDGQT LFVANPPSVP VNDVNTAPNT STFAVHDSPS VVASPPGSPA QPQAPAVAER IVDGRTTYIL NSMLQDVIKR GTGRRALSMN RPDIAGKTGT TNDSKDAWFS GYNADYVTTV WSGFDQPESL GRHEFGGTVS LPIWMDYMSA ALKDKPPHQQ AEPSGILSLR VDPLSGRAAT PSTPNAFFEL FKSEDTPPSV NELGGGSAPG SPLPADESAP IDLF
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