| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5132 |
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| Symbol | pilM |
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| ID | 1186817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5839427 |
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| End bp | 5840491 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637396452 |
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| Product | type IV pilus biogenesis protein PilM |
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| Protein accession | NP_794864 |
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| Protein GI | 28872245 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
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| TIGRFAM ID | [TIGR01175] type IV pilus assembly protein PilM |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.569259 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTTCGAAC TCTTTGGTAA GAAGGCCAAT ACCCTTCTAG GGATCGATAT TAGCTCCACC
TCGGTAAAAC TCCTGGAATT GAGTCGTTCC GGCACTCGTT ACAAGGTCGA GTCTTACGCA
GTCGAGCCGT TACCGGCCAA CGCTGTCGTC GAAAAGAATA TTGCCGAACT CGAAGGGGTT
GGTCAGGCGC TGTCTCGCGT ACTGATCAAG GCCAAGACCA ACGTCAAGAT TGTGGCGGTT
GCCGTGGCGG GTTCCGCGGT GATCACCAAA ACCATCGAGA TGGACGCCGG TCTCTCCGAC
GACGACATGG AAAATCAGCT CAAGCTTGAA GCTGATCAGT ACATCCCTTA CCCGCTCGAA
GAAGTTGCCA TCGATTTTGA AGTGCAGGGC TACTCGGTCC GCAACCCGGA ACGTGTCGAA
GTCCTGCTGG CGGCCTGCCG CAAGGAAAAC GTCGAAGTGC GCGAGGCCGC GCTGGCCCTG
GCCGGGCTGA CGGCGCGTGT CGTGGACGTC GAGGCCTACG CGCTGGAGCG TTCATTCGGT
CTGCTGGCTG CGCAACTGGG CAACGGCCAT GACGAACTGA CCGTTGCCGT GGTGGACATC
GGCGCGACCA TGACCACCCT CAGCGTGCTG CACCATGGTC GAATCATCTA TACCCGCGAG
CAATTGTTCG GCGGTCGCCA GTTGACTGAC GAAATTCAGC GCCGCTACGG GCTTTCCATG
GAAGAGGCCG GGCTGGCCAA GAAGCAGGGC GGGCTGCCTG ACGATTATGT CAGCGAGGTG
CTGGATCCCT TCAAGGAAGC GCTGGTGCAA CAGGTTTCCC GATCCCTGCA GTTCTTCTTT
GCGGCCGGTC AGTACAACTC CGTGGATCAC ATCATGCTGG CAGGCGGTAC GGCGTCGATC
TCAGGGCTGG AGCATTTGAT TCAGCGACGT ATCGGCACAC CGACCATGGT TGCCAACCCG
TTTGCCGACA TGGCCTTGAG TTCCAAGGTC AATGCCGGTG CGCTGGCCAG CGATGCACCT
GCCCTGATGA TCGCGTGCGG TCTGGCGTTG AGGAGCTTTG ACTGA
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| Protein sequence | MFELFGKKAN TLLGIDISST SVKLLELSRS GTRYKVESYA VEPLPANAVV EKNIAELEGV
GQALSRVLIK AKTNVKIVAV AVAGSAVITK TIEMDAGLSD DDMENQLKLE ADQYIPYPLE
EVAIDFEVQG YSVRNPERVE VLLAACRKEN VEVREAALAL AGLTARVVDV EAYALERSFG
LLAAQLGNGH DELTVAVVDI GATMTTLSVL HHGRIIYTRE QLFGGRQLTD EIQRRYGLSM
EEAGLAKKQG GLPDDYVSEV LDPFKEALVQ QVSRSLQFFF AAGQYNSVDH IMLAGGTASI
SGLEHLIQRR IGTPTMVANP FADMALSSKV NAGALASDAP ALMIACGLAL RSFD
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