| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5131 |
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| Symbol | pilN |
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| ID | 1186816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5838801 |
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| End bp | 5839427 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637396451 |
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| Product | type IV pilus biogenesis protein PilN |
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| Protein accession | NP_794863 |
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| Protein GI | 28872244 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3166] Tfp pilus assembly protein PilN |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.250132 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCGCGGA TCAACTTATT ACCGTGGCGT GAAGAGCTTC GCGAAGCACG CAAAAAACGC
TTTCTGACCG CACTGGTCTG CGTGCTGGTG GTGTCGGTCG GCATTCTCTT TCTGATCGAT
CGCTATGTCA GCAGCGCCAT TGAACATCAG ATGGCCCGCA ACGCGTTTCT GCAAACCCAG
ATCGCCCAGC TCGATATCCG CATCAAGGAG ATCAGCGACC TGAAGGCGCG TCGCAAACAA
CTGCTTGAGC GCATGAAGAT CATCCAGGAC CTGCAAGGCA ACCGGCCTGT CACCGGGCGT
GTGTTTGACC AGTTGGCGCG CACTCTGCCG GATGGCGTTT ATTTCTCGCA GGTCAAAATG
ACCAGCAAAC TGATTGCCAT CAGTGGCGCT GCCGAATCGA ACAACCGGGT TTCCGACCTC
ATGCGTAACC TTGAAGCCTC CGACTGGCTG GAAGCGCCAA GCCTCACCGA GGTCAAGGCC
ACGACGGCGG GCGCTGTCGA TCAGGCCAAC GTCTTTCAGT TGACCGTGCG CCAGACCCAG
CCACCGGTTG CCGCAGTTGC TCCAGCCGGC GCTGCATCGG TCGCACCCAC AGCCGCACCC
GCACCCGCTG CAGGAGCCAA GCCATGA
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| Protein sequence | MARINLLPWR EELREARKKR FLTALVCVLV VSVGILFLID RYVSSAIEHQ MARNAFLQTQ
IAQLDIRIKE ISDLKARRKQ LLERMKIIQD LQGNRPVTGR VFDQLARTLP DGVYFSQVKM
TSKLIAISGA AESNNRVSDL MRNLEASDWL EAPSLTEVKA TTAGAVDQAN VFQLTVRQTQ
PPVAAVAPAG AASVAPTAAP APAAGAKP
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