Gene PSPTO_5130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5130 
SymbolpilO 
ID1186815 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp5838181 
End bp5838804 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content56% 
IMG OID637396450 
Producttype IV pilus biogenesis protein PilO 
Protein accessionNP_794862 
Protein GI28872243 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3167] Tfp pilus assembly protein PilO 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.818389 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATATGT CCGAATGGCT GGAAGGGCTG CGCAAGGTTG ATCTGAGCGA GCTGGACCTG 
AACAACATGG GTTCCTGGCC CGCCGCGATC AAGGCGATTG CCGGTGTGCT GGTCGCGGTA
CTGATTTTCG CGCTGGGCTA TTTCTTCTTT ATTCAGGATC TGGAAACCCA GCTGGAGAGC
ACGCAGGCCA GCGAGGTAGC GCTTAAAGAG CAGTTTTCCA ACAAGGCGTT CCAGGCTGCG
AACCTTGAGC CCTACAGAAA GCAGATGGAA GAAATGGAAA ACACCTTCGG GGCGCTGCTG
CGGCAATTGC CGAGCGACAC CGAAGTGCCA GGCCTGCTTG AAGACATCAC CCGCACCGGG
CTGGGAAGCG GGCTTGAGTT CGAGGAAATC AAGCTGTTGC CCGAAGCGGT CCAGCAGTTC
TATATCGAGC TGCCGATACA GATCACAGTG GTGGGTGGCT ATCACGACCT GGCAACCTTT
GTCAGCGGCG TTGCCAGCCT GCCGCGCATC GTCACGCTGC ATGATTTCGA GATTAAGCCG
GTCGATTCGA AGGTGCCGAC CAAGTTGCGC ATGAGCATTC TGGCCAAGAC CTACCGCTAC
AACGATGAAG GGCTGAAGAA ATGA
 
Protein sequence
MNMSEWLEGL RKVDLSELDL NNMGSWPAAI KAIAGVLVAV LIFALGYFFF IQDLETQLES 
TQASEVALKE QFSNKAFQAA NLEPYRKQME EMENTFGALL RQLPSDTEVP GLLEDITRTG
LGSGLEFEEI KLLPEAVQQF YIELPIQITV VGGYHDLATF VSGVASLPRI VTLHDFEIKP
VDSKVPTKLR MSILAKTYRY NDEGLKK