Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5130 |
Symbol | pilO |
ID | 1186815 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5838181 |
End bp | 5838804 |
Gene Length | 624 bp |
Protein Length | 207 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637396450 |
Product | type IV pilus biogenesis protein PilO |
Protein accession | NP_794862 |
Protein GI | 28872243 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3167] Tfp pilus assembly protein PilO |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.818389 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATATGT CCGAATGGCT GGAAGGGCTG CGCAAGGTTG ATCTGAGCGA GCTGGACCTG AACAACATGG GTTCCTGGCC CGCCGCGATC AAGGCGATTG CCGGTGTGCT GGTCGCGGTA CTGATTTTCG CGCTGGGCTA TTTCTTCTTT ATTCAGGATC TGGAAACCCA GCTGGAGAGC ACGCAGGCCA GCGAGGTAGC GCTTAAAGAG CAGTTTTCCA ACAAGGCGTT CCAGGCTGCG AACCTTGAGC CCTACAGAAA GCAGATGGAA GAAATGGAAA ACACCTTCGG GGCGCTGCTG CGGCAATTGC CGAGCGACAC CGAAGTGCCA GGCCTGCTTG AAGACATCAC CCGCACCGGG CTGGGAAGCG GGCTTGAGTT CGAGGAAATC AAGCTGTTGC CCGAAGCGGT CCAGCAGTTC TATATCGAGC TGCCGATACA GATCACAGTG GTGGGTGGCT ATCACGACCT GGCAACCTTT GTCAGCGGCG TTGCCAGCCT GCCGCGCATC GTCACGCTGC ATGATTTCGA GATTAAGCCG GTCGATTCGA AGGTGCCGAC CAAGTTGCGC ATGAGCATTC TGGCCAAGAC CTACCGCTAC AACGATGAAG GGCTGAAGAA ATGA
|
Protein sequence | MNMSEWLEGL RKVDLSELDL NNMGSWPAAI KAIAGVLVAV LIFALGYFFF IQDLETQLES TQASEVALKE QFSNKAFQAA NLEPYRKQME EMENTFGALL RQLPSDTEVP GLLEDITRTG LGSGLEFEEI KLLPEAVQQF YIELPIQITV VGGYHDLATF VSGVASLPRI VTLHDFEIKP VDSKVPTKLR MSILAKTYRY NDEGLKK
|
| |