| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5128 |
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| Symbol | pilQ |
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| ID | 1186813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5835504 |
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| End bp | 5837660 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637396448 |
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| Product | type IV pilus biogenesis protein PilQ |
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| Protein accession | NP_794860 |
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| Protein GI | 28872241 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.981082 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTGGG CAAGGCCAAG TATGCACAGT AGCGCTCAAC GGAAATTGAT CATGACCCGG
ATTCTCTCGA TTATCGGCGT GTCGTTATGC ATAGCGATGC TGTCGCCGGT TCTCCAGGCT
GCCAACCTCA AGACCCTGGA TGTCGCCGCC CTGCCAGGCG ACCGCATCGA GCTCAAGCTT
GCCTTTGACG CACCGGTGCC CGCGCCTCGC GGCTACACCA CCGCGCAACC GGCGCGCATC
GCTCTGGACC TGCCGGGCGT GACCAGCCAG CTGGAGACCA AAAGCCGTGA GCTGGGCACC
GGCAATGCAC GCAGCGTAGT GGTGGTGCAG GCTCAGGATC GCACGCGAGT GATCATCAAC
CTGACGACGC TTGCGCCTTA CAGCTCTCGC GTTGACGGCA ACAATCTGTT TGTGGTCATC
GGCCAGGGTG CCGCCGCAGC GCAGGCCTCC CAGCCGACCA CTGCGATGGG CGCGCAACGG
GTAGCGGTGC CGCCTCCAGC CCCGGCGTCT GCCAGACCCT TTATACCGGC GGGCGTCAAA
GCCATCCGCA ATGTCGATTT TCAGCGTGGT GAGCTGGGCG AAGGCAATGT GGTCATAGAC
CTGAGTAACC CGAGCATCGC GCCTGATATT CAGGAGCAGG GCGGCAAGAT CCGTGTCGAC
TTCGCCAAGA CCCAGTTGCC CGAGCCTCTG CGTGTGCGGC TGGACGTCAA GGATTTCGCG
ACCCCTGTGC AGTTCGTCAG TGCGTCGGCC ACGGGCGACA AGGCCAGTAT TCTGATCGAG
CCGTCGGGTG CCTTCGACTA CTCGGCGTTC CAGACCGAAA ACAAGCTGAC CATCAGTGTG
CGTCCGTTGA CCAACGAAGA TCTGGACCGC CGCGCCGCCG ACAAGCCGGT GTACACCGGT
GAAAAGCTCT CGCTTAACTT CCAGGACATC GATGTGCGTT CGGTGCTGCA ACTGATCGCC
GACTTCACCA ACCTCAATCT GGTGGCCAGT GACACGGTTC AGGGCGGCAT CACCCTGCGC
CTGCAGAACG TGCCCTGGGA TCAGGCGCTG GACCTGGTGC TGAAAACCAA AGGCCTGGAC
AAGCGCAAGG TCGGCAGTGT TCTGCTGGTT GCGCCAGCGG ATGAAATTGC CGCCCGCGAA
CGCCAGGAGC TGGAATCGCT CAAGCAGATT GCCGAACTGG CACCGCTGCG CCGCGAGCTG
TTGCAGGTCA ATTACGCCAA GGCCGCCGAC ATCGCCAAGC TGTTTCAGTC GGTGACCAGT
GCCGAGTCCA AGGCTGAAGA GCGTGGCTCG ATCACCGTGG ACGATCGCAC CAACAACATC
ATTGCCTACC AGACTCAGGA CCGTCTCGAC GAACTGCGTC GCATTGTTTC GCAACTGGAT
ATTCCAGTGC GCCAGGTGAT GATCGAGGCG CGTATCGTCG AGGCCAACGT CGATTACAAC
AAGCAGTTGG GTGTGCGCTG GGGTGGCTCG ACCAATACCA GTCGCAACGG TAAATGGACC
ACCTACGGTC TGGACGACAA TGGTGATGAG GGCGGTAACA CGAATGCAAA CCTGACCTCC
AACATCCCTT TTGTTGACTT GGGTGCAGCC GATGCGACCA CAGGCATTGG CTTGGGCTTC
GTAACCAACA ACACGCTGCT GGACCTTGAG CTGAGCGCGA TGGAGAAGAC CGGCAACGGT
GAAATCGTCT CCCAGCCCAA AGTGGTCACA TCCGACAAGG AAACCGCCAA GATCCTCAAG
GGCACAGAGA TTCCGTATCA GGAATCCAGC TCCAGCGGCG CCACCACCGT GAGCTTCAAG
GAGGCTTCGC TGTCGCTTGA AGTCACGCCG CAGATCACGC CGGACAACCG CATCATTATG
GAGGTCAAGG TCACCAAGGA TGAGCCGGAC TACCTGAATG CGGTGCTTGG CGTACCGCCC
ATCAAGAAAA ACGAGGTCAA CGCCAAAGTG CTGATTTCCG ATGGCGAAAC CATCGTGATC
GGTGGTGTGT TCTCCAATAC GCAAAGTAAA GTTGTCGATA AAGTGCCATT TCTTGGCGAT
GTACCGTATC TTGGCCGGCT TTTCAGGCGC GATGTGGTAT CCGAGTCCAA ATCCGAGCTG
TTGGTATTTT TGACTCCGCG TATCATGAAC AACCAGGCGA TTTCTGTGAG TCGTTGA
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| Protein sequence | MKWARPSMHS SAQRKLIMTR ILSIIGVSLC IAMLSPVLQA ANLKTLDVAA LPGDRIELKL
AFDAPVPAPR GYTTAQPARI ALDLPGVTSQ LETKSRELGT GNARSVVVVQ AQDRTRVIIN
LTTLAPYSSR VDGNNLFVVI GQGAAAAQAS QPTTAMGAQR VAVPPPAPAS ARPFIPAGVK
AIRNVDFQRG ELGEGNVVID LSNPSIAPDI QEQGGKIRVD FAKTQLPEPL RVRLDVKDFA
TPVQFVSASA TGDKASILIE PSGAFDYSAF QTENKLTISV RPLTNEDLDR RAADKPVYTG
EKLSLNFQDI DVRSVLQLIA DFTNLNLVAS DTVQGGITLR LQNVPWDQAL DLVLKTKGLD
KRKVGSVLLV APADEIAARE RQELESLKQI AELAPLRREL LQVNYAKAAD IAKLFQSVTS
AESKAEERGS ITVDDRTNNI IAYQTQDRLD ELRRIVSQLD IPVRQVMIEA RIVEANVDYN
KQLGVRWGGS TNTSRNGKWT TYGLDDNGDE GGNTNANLTS NIPFVDLGAA DATTGIGLGF
VTNNTLLDLE LSAMEKTGNG EIVSQPKVVT SDKETAKILK GTEIPYQESS SSGATTVSFK
EASLSLEVTP QITPDNRIIM EVKVTKDEPD YLNAVLGVPP IKKNEVNAKV LISDGETIVI
GGVFSNTQSK VVDKVPFLGD VPYLGRLFRR DVVSESKSEL LVFLTPRIMN NQAISVSR
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