| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5121 |
|---|
| Symbol | gltD |
|---|
| ID | 1186806 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5825777 |
|---|
| End bp | 5827195 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637396441 |
|---|
| Product | glutamate synthase, small subunit |
|---|
| Protein accession | NP_794853 |
|---|
| Protein GI | 28872234 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01318] glutamate synthase small subunit family protein, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAAC GTCTCAGTAA CGACTTCCAG TTCATCGACG TCGGGCGTAA AGACCCGAAG
AAGAAACTGC TGCGTCAACG CAAGAAAGAG TTCGTGGAAA TCTACGAACC CTTCAAACCC
CAGCAGTCCG CCGATCAGGC GCACCGCTGC CTGGGTTGCG GCAACCCGTA TTGCGAGTGG
AAGTGCCCGG TGCACAACTT CATTCCCAAC TGGCTCAAGC TGGTTGCCGA GGGCAATATT
CTCGCGGCGG CGGAGTTGTC CCACCAGACC AACACCCTGC CGGAAGTCTG CGGCCGCGTG
TGCCCCCAGG ATCGCCTGTG TGAAGGTGCC TGCACGCTGA ACGACGGCTT TGGTGCGGTC
ACCATCGGCT CGGTCGAGAA GTACATCACC GACACCGCGT TCGCCATGGG CTGGCGTCCG
GACATGTCCA GGGTCATACC GACCGGCAAG CGCGTCGCCA TCATTGGCGC AGGGCCTGCG
GGCCTTGGCT GTGCCGACGT GCTGGTGCGT GGCGGCGTGA CCCCGGTGGT GTTCGACAAG
AACCCTGAAA TCGGCGGTCT GCTGACCTTC GGCATCCCCG AATTCAAGCT GGAAAAATCC
GTGCTCAGCC ATCGGCGTGA AGTGTTCACC GGCATGGGGA TCGAGTTCCG GCTCAACACC
GAAGTCGGCA AGGACGTGAC CATCGACCAG TTGCTCGAAG AGTACGATGC GGTGTTCATG
GGCATGGGCA CCTACACCTA CATGAAAGGC GGTTTTGCCG GTGAAGACCT GCCGGGCGTG
CACGATGCGC TCGACTTCCT GATTGCCAAC GTCAACCGTA ACCTGGGCTT CGAAAAGGCG
CCGGAAGACT TTGTCGACAT GAAAGGCAAG CGCGTTGTCG TGCTGGGCGG CGGCGACACG
GCGATGGACT GCAACCGTAC TTCGATCCGT CAGGGCGCCA AATCGGTCAC CTGCGCCTAC
CGTCGCGACG AAGAAAACAT GCCGGGTTCA CGCAAGGAAG TGAAGAACGC CAAGGAAGAG
GGCGTGCGCT TCCTCTACAA CCGCCAACCC ATCGCCATTG TCGGCGAAGG CAAGGTCGAA
GGCGTCAAGG TGGTCGAAAC GCGTCTTGGC GAACCCGACG CCCGTGGCCG TCGCAGCCCC
GAGCCGATTC CGGGTTCTGA AGAGATCATC CCGGCAGACG CCGTGGTCAT CGCCTTTGGC
TTCCGCCCAA GCCCGGCACC GTGGTTCGAG CAGTTCACGA TCAGCACCGA CAGTCAGGGC
CGCGTCGTCG CCCCGGAGCA GGCGCAGTAC AAGCACCAGA CCAGCAATCC GAAAATCTTT
GCCGGTGGTG ACATGGTTCG CGGCTCCGAC CTGGTGGTCA CTGCGATCTT CGAAGGCCGC
AATGCGGCTG AAGGGATCAT GGATTACCTC GGCGTCTGA
|
|---|
| Protein sequence | MAERLSNDFQ FIDVGRKDPK KKLLRQRKKE FVEIYEPFKP QQSADQAHRC LGCGNPYCEW
KCPVHNFIPN WLKLVAEGNI LAAAELSHQT NTLPEVCGRV CPQDRLCEGA CTLNDGFGAV
TIGSVEKYIT DTAFAMGWRP DMSRVIPTGK RVAIIGAGPA GLGCADVLVR GGVTPVVFDK
NPEIGGLLTF GIPEFKLEKS VLSHRREVFT GMGIEFRLNT EVGKDVTIDQ LLEEYDAVFM
GMGTYTYMKG GFAGEDLPGV HDALDFLIAN VNRNLGFEKA PEDFVDMKGK RVVVLGGGDT
AMDCNRTSIR QGAKSVTCAY RRDEENMPGS RKEVKNAKEE GVRFLYNRQP IAIVGEGKVE
GVKVVETRLG EPDARGRRSP EPIPGSEEII PADAVVIAFG FRPSPAPWFE QFTISTDSQG
RVVAPEQAQY KHQTSNPKIF AGGDMVRGSD LVVTAIFEGR NAAEGIMDYL GV
|
|---|
| |