Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5118 |
Symbol | hemE |
ID | 1186803 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5819471 |
End bp | 5820535 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637396438 |
Product | uroporphyrinogen decarboxylase |
Protein accession | NP_794850 |
Protein GI | 28872231 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGCCC TGAAGAACGA CCGTTTCCTT CGTGCTTTGC TCAAGCAACC CGTAGACGTC ACGCCGGTGT GGATGATGCG TCAGGCCGGC CGCTACCTGC CGGAATACCG CGCCAGCCGG GCAAGCGCCG GGGATTTCAT GAGCCTGTGC AAGAACCCGC AGTTCGCCTG TGAAGTCACG CTGCAACCGC TGGATCGTTA TCCGCTGGAT GCCGCGATTC TGTTTTCCGA CATCCTGACC ATTCCCGATG CGATGGGCCT GGGCCTGTAC TTCGAGACCG GCGAAGGCCC GCGTTTCAAG AAAACCGTCA GCACACTGGC GGACATCGAA GCGCTGCCAA TCCCGGATGC ACAGCAAGAC CTGGGTTATG TGATGGACGC GGTCAGCACC ATCCGCCGCG AACTCAACGG TCGTGTGCCA CTGATCGGTT TTGCCGGCAG CCCGTGGACC CTGGCGACCT ATATGGTCGA AGGCGGCTCG TCCAAGGACT TCCGCAAATC CAAGGCCATG CTCTACGACA ACCCGCAAGC CATGCACCTG CTGCTCGACA AGCTGGCGCA GTCGGTGACC TCGTACCTGA ACGGCCAGAT TCTGGCCGGT GCCCAAGCGG TGCAGATCTT CGACAGTTGG GGCGGCAGCC TTTCTTCGGC GGCGTATCAG GAATTCTCGC TGGCGTACAT GCGCAAGATC GTCAACGGCC TGATTCGTGA GAACGACGGG CGCAAAGTGC CGGTCATCGT CTTCACCAAA GGCGGCGGAC TGTGGCTGGA AAGCATCGCT GAGATCGGTG CCGACACCCT CGGCCTGGAC TGGACCTGCG ACATCGGCGA AGCGCGTCAG CGTGTCGGCA ACAAGGTTTC GCTACAAGGC AACATGGACC CGACCGTGCT CTACGCTCGC CCGGAAGCCA TCCGCCAGGA AGTCGCGCGC ATCCTCGCCA GCTACGGCAG CGGCACCGGC CACGTCTTCA ACCTCGGCCA CGGCATCACC CCCGAAGTCG ACCCGGCCAA TGCCGGTGCG TTCATCAACG CAGTACACGA GTTGTCGGCG CAGTATCACC AGTAA
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Protein sequence | MTALKNDRFL RALLKQPVDV TPVWMMRQAG RYLPEYRASR ASAGDFMSLC KNPQFACEVT LQPLDRYPLD AAILFSDILT IPDAMGLGLY FETGEGPRFK KTVSTLADIE ALPIPDAQQD LGYVMDAVST IRRELNGRVP LIGFAGSPWT LATYMVEGGS SKDFRKSKAM LYDNPQAMHL LLDKLAQSVT SYLNGQILAG AQAVQIFDSW GGSLSSAAYQ EFSLAYMRKI VNGLIRENDG RKVPVIVFTK GGGLWLESIA EIGADTLGLD WTCDIGEARQ RVGNKVSLQG NMDPTVLYAR PEAIRQEVAR ILASYGSGTG HVFNLGHGIT PEVDPANAGA FINAVHELSA QYHQ
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