| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5117 |
|---|
| Symbol | |
|---|
| ID | 1186802 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 5817929 |
|---|
| End bp | 5819443 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637396437 |
|---|
| Product | N-acyl-D-amino acid deacylase family protein |
|---|
| Protein accession | NP_794849 |
|---|
| Protein GI | 28872230 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3653] N-acyl-D-aspartate/D-glutamate deacylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTACG ACTTGATCAT TCGCGATGCG CTGGTCATTG ATGGCAGCGA TACGCCCGGA
GTGCGCGCCG ACGTGGCGAT CAGCGACGGA CGCATTCAGC GCATCGGCAG CCTGACCGAG
GCCCGAGCGC GGGATGAGGT CAATGCAGCG GGACGCGTGC TGGCTCCAGG GTTTATCGAC
GTTCACACCC ACGACGACAC GGTGGTCATT CGCAAACCCG AGATGCTGCC CAAAATCAGC
CAGGGCGTGA CGACGGTGAT CGTCGGCAAC TGCGGGATCA GCGCATCGCC GGTCTCGCTG
CGCGGTAATC CGCCCGACCC GATGAACCTG CTCGGCGACG CAGCGGCGTT TGTCTATCCA
CGTTTCGCCG ACTACCGTGC GGCGGTGGAC AACGCCCGGC CCGCGGTGAA CGTGGCCGCC
CTGATTGGCC ACACGGCATT GCGCAGCAAC CACATGGATG ACTTGTTGCG CAGCGCCAGC
CCGGCGGAAA TTGCCGCCAT GCGCGAGCAG TTGCGCGACA GCCTCGAAGC CGGCGCGCTG
GGTTTGTCGA CCGGCCTTGC CTACGCCTCG GCCTTCTCGG CCGAAACCGG CGAAGTCAAA
CAACTGGCCG AAGAGCTGAC GGCGTTCGGC GCGGTCTACA CCACTCACTT ACGCAGCGAA
TTCGAGCCGG TGCTGGAGGC GATGGCAGAG GCATTCGACA TCGGTCGCCA TGCACGCTCG
CCAGTGATCA TTTCCCACCT GAAATGCGCG GGCGCAGGTA ACTGGGGGCG TAGCCCGCAA
CTGCTGGCGG CACTGGAGAG CGCAGCGCAG GGCCATCCGG TCGGCTGCGA TTGTTACCCC
TATGCAGCCA GTTCTTCGAC GCTGGACCTT AAACAGGTCA CTGACGCGTT CCGTATCACT
ATCACCTGGT CAACGCCGCA CCCGGATCAG GGCGGCCGGG ACTTGCAGGA TATTGCCGCT
GGCTGGGGGC TGTCATTACA AGACACCGCC CGCAAGTTGC AGCCTGCAGG CGCAGTGTAT
TACGGCATGG ATGAAGGCGA TGTCGAACGC ATCATGTCCC ACCCGCTGTC GATGATCGGT
TCCGATGGCC TTCCGGAAGA CCCGTTCCCC CATCCGCGCT TGTGGGGCGC TTTCCCACGG
GTGCTCGGCC ACTTCAGCCG CGACAAGAAA CTGTTTGCCT TGCACACCGC CGTCCACAAA
ATGACCGGGC TTTCGGCAGC GCGCTTTGCC CTGCACGAGC GCGGCCTGAT CCGCGAGGGC
TACTGGGCGG ATCTGGTGTT GTTCAACCCG CACACCGTGC GCGACATAGC AGACTTCAAA
GATCCTCAGC GAGCAGCAGA AGGCATTGAT GGCGTCTGGG TAAACGGCCA ACTGAGCTAT
GCCGAGGGCA AACCGCAGGG CGAGCGTCAG GGCAGATTTC TGCCTCGCAG CGGGTCAATG
GTGGAGGGCT TTTCGGGTGC AAAAACGCCG ACGCAGGCGT CGGCGATCAA GCGTGAAAGG
AACGATGCGT CTTGA
|
|---|
| Protein sequence | MLYDLIIRDA LVIDGSDTPG VRADVAISDG RIQRIGSLTE ARARDEVNAA GRVLAPGFID
VHTHDDTVVI RKPEMLPKIS QGVTTVIVGN CGISASPVSL RGNPPDPMNL LGDAAAFVYP
RFADYRAAVD NARPAVNVAA LIGHTALRSN HMDDLLRSAS PAEIAAMREQ LRDSLEAGAL
GLSTGLAYAS AFSAETGEVK QLAEELTAFG AVYTTHLRSE FEPVLEAMAE AFDIGRHARS
PVIISHLKCA GAGNWGRSPQ LLAALESAAQ GHPVGCDCYP YAASSSTLDL KQVTDAFRIT
ITWSTPHPDQ GGRDLQDIAA GWGLSLQDTA RKLQPAGAVY YGMDEGDVER IMSHPLSMIG
SDGLPEDPFP HPRLWGAFPR VLGHFSRDKK LFALHTAVHK MTGLSAARFA LHERGLIREG
YWADLVLFNP HTVRDIADFK DPQRAAEGID GVWVNGQLSY AEGKPQGERQ GRFLPRSGSM
VEGFSGAKTP TQASAIKRER NDAS
|
|---|
| |