| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5070 |
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| Symbol | |
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| ID | 1186755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5774194 |
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| End bp | 5776083 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637396390 |
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| Product | ATP-dependent RNA helicase rhlE, putative |
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| Protein accession | NP_794802 |
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| Protein GI | 28872183 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCTTTG CTTCCCTCGG TCTCTCCGAG GCTTTAGTCC GCGCCATCGA GGCAGCGGGC
TACACCCAGC CTACCCCAGT GCAACAGCGG GCCATCCCCG CCGTGTTGCA AGGTCGCGAC
CTGATGGTTG CGGCACAGAC CGGTACGGGT AAAACCGGTG GTTTCGCCCT CCCTATTCTG
GAGCGGCTGT TTCCCAATGG TGTTCCGGAC AAATCCCAGC GTCACGGCCC GCGCCAACCC
CGCGTACTGG TCCTGACCCC GACTCGCGAA CTGGCCGCGC AAGTGCACGA GAGCTTCAAG
CTCTATGCCC GCGACCTCAA GTTCGTCAGT GCCTGCATCT TCGGCGGCGT CGGCATGAAC
CCACAGGTTC AGGCCATGTC CCGTGGTGTA GACGTACTGG TGGCCTGCCC TGGCCGCCTG
CTCGATCTGG CCGGTCAAGG CAGCGTCGAT CTGTCCCACG TCGAAATTCT GGTGCTCGAT
GAAGCAGACC GGATGCTCGA CATGGGCTTC GTCCATGACG TCAAAAAGGT CCTGGCACGT
TTGCCGGCCA AGCGTCAGAA CCTGCTGTTC TCAGCGACCT TCTCCAATGA CATCACGTCC
CTGGCCGGCA AGCTGCTGCA CAACCCGGAG CGTATCGAAG TCACGCCGCC GAACACCACG
GTCGAGCGCA TCGAGCAACG GGTTTTCCGT CTGGCTGCCA ACCACAAGCG TTCGCTGCTG
GCGCATCTGA TCACCGTGGG CGCCTGGGAA CAGGTGCTGG TGTTCACCCG CACCAAGCAC
GGTGCCAACC GTCTCGCCGA GTACCTGGAC AAACACGGCC TTGCGGCAGT AGCGATCCAC
GGCAACAAGA GCCAGAACGC ACGTACCAAA GCGCTGGCCG ATTTCAAGGC CGGTGATGTG
CGCATCATGG TGGCTACCGA TATCGCCGCG CGCGGTCTGG ATATCGATCA GTTGCCGCAT
GTCGTCAACT TCGAGCTGCC TAACGTCGAT GAAGACTACG TGCACCGTAT CGGTCGTACC
GGCCGTGCAG GTCGCTCCGG CGAAGCCATC TCGCTGGTTG CACCGGACGA AGAGAAGCTG
CTCAAAAGTA TCGAGCGCAT GACCAAACAG AAGATTGCCG ACGGTGATCT AATGGGCTTC
GATATCACTG CAGTTGAGGC CGAGAAGCCT GAAGTGCGTG AGCGTCCCGA TGTTCGCAAC
TCGCGCGGCG CACGTCCTGC GCGTGCCGAT GGCGACAAGA ACAACGGTGG TCGTCGCGAC
AAGGGCAAGG ATAAAGGTAA GGACAAACCT GCCGCTGCGG CAGCTACAGG CGAACGCCCA
GCCCGGCCGC CACGCGAAAA AAAGCCCCGT GAGGGCACGC CTCGTAGCGA ACAGCGTGCA
GTGCAGCCTT CAACTCCGCG TCAGGCATCA GATCGTGCCC CGGACGAGTT TCGCGACGAC
GAAGTCGATA ACTTCGGCAA TCGTGCTGAC TACGTAAGCC CTTATCAGGG TAAAGGCCAA
AACCGTGGCC GTCGCCCTGC TGCTGCGCCT GGCGCTGCAC CGGCGGCCGG CGGCGCTGCA
CGTCCGGCCA ATTCGGGCCG CCCTGCGGGT GGCGCGCCAC GTACCGGTTC TGGTGCTGGT
GCACCGAAGC GCAATGGTTC GGGTTCTTCG GCGCCGCGCT CGCGCGACAG CCAGCCGCGC
GGTCGTCGCC CGGCACGCGA AGATCAACCC TTGCCGCGCG AAGGCCAGGA GCCCGCTGTA
CGCGCCCCAC GCGACGGCCA GCCTCAGCCA AAGATCGTGC ACAAAGAGTC CAAGATCGAC
CGCTTCCCGT CTGCCGAGCA ACTGGACCAG TTGCCAGCAC GCCCACGTGG TGAAAAACCG
GCCCTGCTGA CCCGCAACCG CGACAGCTGA
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| Protein sequence | MSFASLGLSE ALVRAIEAAG YTQPTPVQQR AIPAVLQGRD LMVAAQTGTG KTGGFALPIL
ERLFPNGVPD KSQRHGPRQP RVLVLTPTRE LAAQVHESFK LYARDLKFVS ACIFGGVGMN
PQVQAMSRGV DVLVACPGRL LDLAGQGSVD LSHVEILVLD EADRMLDMGF VHDVKKVLAR
LPAKRQNLLF SATFSNDITS LAGKLLHNPE RIEVTPPNTT VERIEQRVFR LAANHKRSLL
AHLITVGAWE QVLVFTRTKH GANRLAEYLD KHGLAAVAIH GNKSQNARTK ALADFKAGDV
RIMVATDIAA RGLDIDQLPH VVNFELPNVD EDYVHRIGRT GRAGRSGEAI SLVAPDEEKL
LKSIERMTKQ KIADGDLMGF DITAVEAEKP EVRERPDVRN SRGARPARAD GDKNNGGRRD
KGKDKGKDKP AAAAATGERP ARPPREKKPR EGTPRSEQRA VQPSTPRQAS DRAPDEFRDD
EVDNFGNRAD YVSPYQGKGQ NRGRRPAAAP GAAPAAGGAA RPANSGRPAG GAPRTGSGAG
APKRNGSGSS APRSRDSQPR GRRPAREDQP LPREGQEPAV RAPRDGQPQP KIVHKESKID
RFPSAEQLDQ LPARPRGEKP ALLTRNRDS
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