Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5062 |
Symbol | |
ID | 1186747 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5765947 |
End bp | 5766585 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637396382 |
Product | class II aldolase/adducin domain protein |
Protein accession | NP_794794 |
Protein GI | 28872175 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
TIGRFAM ID | [TIGR00760] L-ribulose-5-phosphate 4-epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.754976 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTGATG AAAACGCCCT GCGTCAGGAA ATCTGCGACG TCGGCCGGCT GTTGTATGGC CGTGGCTACA CGGTCGGCAG CGCGGGCAAC ATCAGCGCAC GTCTTGATGA CGGCTGGCTG ATCACCCCGA CCGACGCCTG CCTGGGCCGC ATGGACCCGG CAGACATCGC CAAAGTCAAT CTGGCCGGTG AATGGGTGTC CGGCAGCAAG CCGTCCAAGA CATTGGCGCT GCACCGCGAA GTTTATGACC GCAACCCGGA AGTCGGCGGC GTGGTGCACA CCCACTCGAC GCATCTGGTG GCGCTGACCC TGGCCGGCGT GTGGCGTGAA GATGACATCC TGCCGCCACT GACGCCCTAT CAAGTCATGA AAGTCGGGCA CATTCCGTTG ATCCCTTACG AGCGTCCGGG CTCGCCGAAA GTCGCCGAGC GCGTGGCGGA GCTGGCCAAC AGCGTACGCG GCGTGATGCT TGAGCGGCTC GGCCCGGTGG TCTGGGAAAG CTCGGTGGCC AAGGCTTGTT ACGCCCTGGA AGAGCTGGAA GAAACCGCCC GTCTGTGGCT GATAAGCAAC CCTAAACCTG CACCGCTGGC CCCGGCGGCG CTGGAAGAAT TGCGTCAGGT GTTCGGCGCG AAGTGGTAA
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Protein sequence | MIDENALRQE ICDVGRLLYG RGYTVGSAGN ISARLDDGWL ITPTDACLGR MDPADIAKVN LAGEWVSGSK PSKTLALHRE VYDRNPEVGG VVHTHSTHLV ALTLAGVWRE DDILPPLTPY QVMKVGHIPL IPYERPGSPK VAERVAELAN SVRGVMLERL GPVVWESSVA KACYALEELE ETARLWLISN PKPAPLAPAA LEELRQVFGA KW
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