Gene PSPTO_5044 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5044 
Symbol 
ID1186729 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp5744017 
End bp5744697 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content59% 
IMG OID637396365 
ProductNLP/P60 family protein 
Protein accessionNP_794777 
Protein GI28872158 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0791] Cell wall-associated hydrolases (invasion-associated proteins) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.982871 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTCCTC TTTTCAAGAC ATGGCTAACC ATTTGCCTAT TTATGCCACT GGCCGCCCAC 
GCCACCAATC GTGAGCAACA ACTTCCTGCG AGCTTCACGG GCTACACCGC CAAAAGTCAC
TCTTCACCGG CACTCGCGAC TCGCAATGCA CCCCAGGAAG CCACACCAGT CTCTCTGCAA
CCTAAAACCT CTCACGCCAC TCAGAAGCCA CTTTCCCGCA AAAACGCCAA GGCCGCCGCC
TTGCAGGCGT CCATCGCCGC GCCTGCCAAA CAGGGCAATG CCGTTGTAAA ACGCGCCTTA
CAGGCTGTCG GTACACCGTA TCGCTGGGGC GGCACCACGC CCGGCAAAGG TCTGGACTGC
AGCGGGCTGG TCAAATATGC CTACACCGAT GTTCGTGAAG TCGACCTGCC GCGCACGTCC
AACGCAATGG CTCAGGGTCA TGGCCAGACC GTGGACCGCA AGGACCTGAA GCCAGGTGAC
CTGCTGTTCT TCAACATCAA GAGCCGCAAC ATCAATCATG TGGCTATCTA CCTGGGCGAC
AACAAGTTCG TCCACGCGCC ACGACGTGGC AAGGCGGTCA CTGTCGACAC GCTGAACAAG
CCGTACTGGA ACAGTCACTA CAAGATCGCC AAGCGCGTGC TGCCCAAGCA GGCACAGCAG
TTGCGCGTCG TTCAGCGCTG A
 
Protein sequence
MRPLFKTWLT ICLFMPLAAH ATNREQQLPA SFTGYTAKSH SSPALATRNA PQEATPVSLQ 
PKTSHATQKP LSRKNAKAAA LQASIAAPAK QGNAVVKRAL QAVGTPYRWG GTTPGKGLDC
SGLVKYAYTD VREVDLPRTS NAMAQGHGQT VDRKDLKPGD LLFFNIKSRN INHVAIYLGD
NKFVHAPRRG KAVTVDTLNK PYWNSHYKIA KRVLPKQAQQ LRVVQR