| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5044 |
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| Symbol | |
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| ID | 1186729 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5744017 |
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| End bp | 5744697 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637396365 |
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| Product | NLP/P60 family protein |
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| Protein accession | NP_794777 |
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| Protein GI | 28872158 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.982871 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGTCCTC TTTTCAAGAC ATGGCTAACC ATTTGCCTAT TTATGCCACT GGCCGCCCAC
GCCACCAATC GTGAGCAACA ACTTCCTGCG AGCTTCACGG GCTACACCGC CAAAAGTCAC
TCTTCACCGG CACTCGCGAC TCGCAATGCA CCCCAGGAAG CCACACCAGT CTCTCTGCAA
CCTAAAACCT CTCACGCCAC TCAGAAGCCA CTTTCCCGCA AAAACGCCAA GGCCGCCGCC
TTGCAGGCGT CCATCGCCGC GCCTGCCAAA CAGGGCAATG CCGTTGTAAA ACGCGCCTTA
CAGGCTGTCG GTACACCGTA TCGCTGGGGC GGCACCACGC CCGGCAAAGG TCTGGACTGC
AGCGGGCTGG TCAAATATGC CTACACCGAT GTTCGTGAAG TCGACCTGCC GCGCACGTCC
AACGCAATGG CTCAGGGTCA TGGCCAGACC GTGGACCGCA AGGACCTGAA GCCAGGTGAC
CTGCTGTTCT TCAACATCAA GAGCCGCAAC ATCAATCATG TGGCTATCTA CCTGGGCGAC
AACAAGTTCG TCCACGCGCC ACGACGTGGC AAGGCGGTCA CTGTCGACAC GCTGAACAAG
CCGTACTGGA ACAGTCACTA CAAGATCGCC AAGCGCGTGC TGCCCAAGCA GGCACAGCAG
TTGCGCGTCG TTCAGCGCTG A
|
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| Protein sequence | MRPLFKTWLT ICLFMPLAAH ATNREQQLPA SFTGYTAKSH SSPALATRNA PQEATPVSLQ
PKTSHATQKP LSRKNAKAAA LQASIAAPAK QGNAVVKRAL QAVGTPYRWG GTTPGKGLDC
SGLVKYAYTD VREVDLPRTS NAMAQGHGQT VDRKDLKPGD LLFFNIKSRN INHVAIYLGD
NKFVHAPRRG KAVTVDTLNK PYWNSHYKIA KRVLPKQAQQ LRVVQR
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