Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5018 |
Symbol | |
ID | 1186703 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5708165 |
End bp | 5709001 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637396339 |
Product | ISPsy9, transposase OrfB |
Protein accession | NP_794751 |
Protein GI | 28872132 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACTGA GGCCTTTGCA TTCTCTGGAC GGCCTGCTGA AGTTTGCCGG TCTGGCACGC AGCACTTTTT ACTATCAACA AAAGGTACTG CTGGCAGATG ACAAATACGC CGGGCTGAAA GACCTGATTC AGGCAACTTT CTACGAGCAC AAGGGCCGGT ATGGCTATCG TCGCATCACG GCAGCTTTGC GCAGGGCGGG CCATCTTGTG AACCACAAGA CGGTGCAGAA ACTAATGGGG CAGCTAGGCC TGAAGAGCCT GATACGCGTG AAGAAATACC GTTCCTACAA AGGCGAAACA GGCAAGGCCG CGCCTAACCT GCTAAAGCGT GATTTCAAAG CGCAATACCT TAACCAGAAA TGGGCCACCG ACGTGACCGA ATTCAAAGTA GGAGGCCAGA AACTCTATCT GTCGCCGATC ATGGATCTGT ACAGCGGCGA AATCATTTCC TATGCGATTG CCAGGCGCCC GCTGTACTCC ATGGTCGACG AAATGCTTGA AGGAGCATTT AAGCGGCTTG GACCGCATGA AAAGCCGATT TTGCATTCCG ACCAGGGCTG GCAATATCGG ATGCCTATTT ACCAGCGACT GCTCAATGAG AATTCGATCA CAGCCAGCAT GTCGCGCAAG GGTAACTGCT ACGACAACGC GGCTATTGAG AGTTTTTTTA GCACGCTGAA ATTCGAATTT TTCTACCTGA ACAAATTTAA CGATCTGGAT GAGCTTCAAG CGGGTATCGA AGAGTACATT GAGTATTACA ATCACTCACG CATAAAACTG AAGCTTAACG GCCTGAGTCC TGTGGAATAC AGAATGCAGG CCGCCAAGGC AGCGTAG
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Protein sequence | MELRPLHSLD GLLKFAGLAR STFYYQQKVL LADDKYAGLK DLIQATFYEH KGRYGYRRIT AALRRAGHLV NHKTVQKLMG QLGLKSLIRV KKYRSYKGET GKAAPNLLKR DFKAQYLNQK WATDVTEFKV GGQKLYLSPI MDLYSGEIIS YAIARRPLYS MVDEMLEGAF KRLGPHEKPI LHSDQGWQYR MPIYQRLLNE NSITASMSRK GNCYDNAAIE SFFSTLKFEF FYLNKFNDLD ELQAGIEEYI EYYNHSRIKL KLNGLSPVEY RMQAAKAA
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