Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5017 |
Symbol | |
ID | 1186702 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5704088 |
End bp | 5708041 |
Gene Length | 3954 bp |
Protein Length | 1317 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637396338 |
Product | bifunctional putA protein |
Protein accession | NP_794750 |
Protein GI | 28872131 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.268901 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCACCA CCACTTTGGG CGTCAAGCTC GACGACCCTA CCCGCGAGCG ATTGAAAGCC GCCGCCCATT CGATCGACCG CACGCCGCAC TGGTTGATCA AGCAGGCGAT TTTCAATTAC CTGGAAAAGC TGGAAAGTGG TGCAACCTTG CTTGAGCTGA ACGGCGCGAC AGGCAAAGAC AGCGAAGACC GTGGTGAGCT GGCAGAAGAT GCAGGCCTGC AATGCTTTCT GGATTTTGCC GAAAGCATTC AGCCGCAGTC AGTGCTGCGT GCGGCGATCA CTTCCGCCTA CCGTCGCCCG GAGCAGGAAG TGGTGCCTAT GCTGCTGGAA CAGGCACGCC TGACAGCGCC TGTCGCCGAA GCGACCAACA AGCTCGCCGC GTCGATTGCC GAAAAACTGC GCAATCAAAA AAGCGCGGGC GGGCGCGCAG GCATCGTTCA AGGCCTGCTG CAGGAGTTTT CGCTGTCCTC CCAGGAAGGC GTTGCCCTGA TGTGTCTGGC TGAAGCACTG CTGCGTATTC CCGACAAAGG CACTCGCGAT GCCTTGATTC GCGACAAGAT CAGCAACGGC AACTGGCAGC CGCACCTGGG CAACAGCCCG TCGCTGTTCG TCAACGCAGC CACCTGGGGC CTGCTGCTGA CCGGCAAGCT GGTCGCCACG CACAACGAAG CAGGCCTGAC CTCCTCGCTG AGCCGGATCA TCGGCAAGCG CGGCGAACCG ATGATCCGCA AGGGCGTCGA CATGGCCATG CGCCTGATGG GTGAGCAGTT CGTCACCGGC GAAACCATTG GCGAGGCTCT GGCCAATGCC AGTCGTTTCG AAGCCAAGGG CTTCCGCTAC TCCTACGACA TGCTGGGTGA AGCAGCGTTG ACCGAACACG ACGCGCAGAA ATATCTGGCG TCCTACGAGC AGGCCATTCA TTCCATCGGC AAAGCCTCCC ACGGTCGCGG CATCTACGAA GGCCCGGGTA TTTCCATCAA GCTGTCGGCG CTGCATCCGC GCTACAGCCG CGCTCAGTAC GAGCGCGTCA TGGACGAGCT CTACCCGCGC CTGCTGTCGC TGACCCTGCT GGCCAAACAG TACGACATCG GCCTGAACAT CGACGCCGAA GAAGCCGACC GCCTGGAGCT GTCGCTTGAT CTGCTTGAGC GCCTGTGCTT CGAGCCGCAA CTGACCGGCT GGAACGGTAT CGGTTTCGTG ATTCAGGCTT ACCAGAAGCG CTGCCCTTAT GTGATCGACT ACGTGATCGA TCTGGCTCGG CGCAGTCGTC ATCGCCTGAT GATCCGCCTG GTAAAAGGCG CGTACTGGGA CAGCGAAATC AAGCGTGCGC AGGTTGAAGG TCTGGAAGGC TATCCGGTCT ACACCCGCAA GGTGTACACC GACGTTTCCT ATATCGCCTG CGCCCGCAAA CTGCTGGCCG CACCGGAAGT CATCTATCCG CAGTTCGCCA CCCACAACGC CCACACCCTG GCGGCCATCT ACCAGATTGC CGGTCAGAAT TATTACCCCG GCCAGTACGA GTTCCAGTGC CTGCACGGCA TGGGCGAGCC ACTCTACGAG CAGGTTGTTG GCAAAGTCGC CGACGGCAAG CTGAACCGTC CGTGCCGCGT GTACGCGCCG GTTGGCACTC ACGAAACGCT GCTGGCCTAT CTGGTCCGGC GCCTGCTGGA GAACGGCGCC AACACCTCGT TCGTCAACCG GATTGCCGAC CATTCGATCT CGATTCAGGA ACTCGTCGCC GATCCGGTCA ACCAGATCGA ACGCATGGCA ACGCAGGAAG GCGGGTTCGG CTTGCCACAC CCGCGTATTC CGCTGCCGCG CGACCTGTAT GGCACCGAGC GCGCCAACTC CAGCGGCATC GATATGGCCA ACGAACATCG TCTGGCGTCG CTGTCCTCAG CCCTGCTGTC GACCGCGCAC AACGACTGGA AAGCTGCGCC AATGCTCGGC TGCCCGGCCA GTGAAGGCAC ACTTGCTGCG GCGTTGAACC CGTCGGATCT GCGTGACGTG GTCGGCCATG TGCAGGAAGC CTCCTTGCAG GATGTCGATA ATGCCATCCA GTGCGCCTTG AGCGCCGGCC CGATCTGGCA GGCCACGCCG CCCGCCGAAC GCGCCGCGAT TCTGGAGCGC GCCGCCGACC TGATGGAAGG CGAGATTCAG CCGCTGATGG GCCTGCTGGT CCGTGAAGCA GGCAAGACGT TCGCGAACGC CATCGCCGAA GTGCGTGAAG CGGTGGACTT CCTGCGCTAC TACGCAGTGC AGGCGCGCAA CGACTTCACC AATGATGCGC ACCGTCCTTT GGGCCCGGTG GTCTGCATCA GCCCATGGAA CTTCCCGCTG GCAATCTTCA GTGGTCAGGT GGCGGCTGCA TTGGCTGCAG GTAACCCGGT ACTGGCCAAA CCCGCCGAGC AGACGCCGCT GATTGCAGCT CAGGCGGTAC GCCTGCTGCT TGAAGCCGGG ATCCCGGAAG GCGTGGTGCA ATTGCTGCCC GGTCGCGGTG AAACCGTCGG GGCCGGGCTG GTGGGCGATG AGCGCGTCAA GGGCGTGATG TTCACCGGCT CCACCGAAGT CGCCCGCCTG CTGCAACGCA ATGTCGCCGA TCGCCTCGAC TCTCAGGGTC GCCCTATCCC ACTAATCGCC GAAACCGGCG GCCAGAACGC AATGATCGTG GACTCCTCGG CGCTGACCGA ACAAGTGGTC ATCGACGTAG TGTCCTCGGC GTTCGACAGC GCCGGGCAAC GTTGCTCGGC ACTGCGCGTG CTGTGCCTGC AGGAAGATTC GGCCGATCGC GTCATTGAAA TGCTCAAGGG CGCGATGGCC GAAAGCCGTC TGGGCAACCC GGAACGCCTG TCCGTGGACA TCGGGCCGGT GATCGATGCC GAGGCCAAGG CCGGCATCGA GAAACACATC CAGGCGATGC GCGACAAGGG CCGCACGGTT TATCAGGTTG CCATCGCCGA AAGCGCCGAA CTCAAGCGCG GCACCTACGT GATGCCAACC TTGATCGAGC TGGAAAGCTT CGATGAACTG CAACGCGAAA TCTTCGGCCC GGTGCTGCAC GTGGTGCGCT ACAAGCGCAA GGAGCTCGGC CTTTTGATCG ACCAGATCAA TGCATCCGGC TACGGCCTGA CGCTCGGCGT TCACACGCGC ATCGACGAAA CCATCGCCAA GGTCATCGAT AACGTCAACG CCGGTAACGT CTACGTCAAC CGCAACATCG TCGGTGCCGT GGTCGGGGTT CAGCCGTTTG GCGGCGAAGG CCTGTCTGGC ACCGGCCCTA AAGCCGGTGG CCCGCTGTAC CTGTATCGCC TGTTGTCGAC ACGACCGCTG GATGCCATCG AAAAATCGTT TGTGCGTGGC GATGCATTGG TTGCACCTGA TACACGTCTG CGCGAAGTGA TGAGCAAACC GCTGCAAGCC TTGAAGGCCT GGGCAGCGAG CAGCCAGCAC GCCGAACTGG ATGTGCTGTG CGGCCAGTAC GCCGAGCAAT CGCAAAGCGG CATCACCCGC CAACTGGCCG GCCCGACCGG CGAGCGCAAC AGCTACGCCA TTCTGCCACG CGAACACGTG CTGTGCCTGG CTGACGACGA GAACGACCTG CTGACCCAAC TGGCAGCCGT ACTGGCTGTC GGCAGCTCAG CCGTATGGCC GGAAACCGAC ATCAGCAAAC CGCTCTTCGC TCGCCTGCCA AAAGAAGTTC AGGCTCGCAT CAAGCTGGTG CCTGACTGGG CCAAGGACGA AGTCGCTATC GACGCTGTTC TGCACCACGG CGACTCCGAC CAATTGCGCG CCATCTGCCA ACAGATCGCC CAGCGCAGCG GCGCAATCGT CGGCGTCAAC GGTCTGTCCC ACGGCGAAAC CAACGTCCCT CTGGAACGCC TGGTGATCGA ACGGGCACTG AGCGTCAACA CGGCGGCTGC GGGGGGCAAT GCGAGCTTGA TGACGATAGG ATGA
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Protein sequence | MATTTLGVKL DDPTRERLKA AAHSIDRTPH WLIKQAIFNY LEKLESGATL LELNGATGKD SEDRGELAED AGLQCFLDFA ESIQPQSVLR AAITSAYRRP EQEVVPMLLE QARLTAPVAE ATNKLAASIA EKLRNQKSAG GRAGIVQGLL QEFSLSSQEG VALMCLAEAL LRIPDKGTRD ALIRDKISNG NWQPHLGNSP SLFVNAATWG LLLTGKLVAT HNEAGLTSSL SRIIGKRGEP MIRKGVDMAM RLMGEQFVTG ETIGEALANA SRFEAKGFRY SYDMLGEAAL TEHDAQKYLA SYEQAIHSIG KASHGRGIYE GPGISIKLSA LHPRYSRAQY ERVMDELYPR LLSLTLLAKQ YDIGLNIDAE EADRLELSLD LLERLCFEPQ LTGWNGIGFV IQAYQKRCPY VIDYVIDLAR RSRHRLMIRL VKGAYWDSEI KRAQVEGLEG YPVYTRKVYT DVSYIACARK LLAAPEVIYP QFATHNAHTL AAIYQIAGQN YYPGQYEFQC LHGMGEPLYE QVVGKVADGK LNRPCRVYAP VGTHETLLAY LVRRLLENGA NTSFVNRIAD HSISIQELVA DPVNQIERMA TQEGGFGLPH PRIPLPRDLY GTERANSSGI DMANEHRLAS LSSALLSTAH NDWKAAPMLG CPASEGTLAA ALNPSDLRDV VGHVQEASLQ DVDNAIQCAL SAGPIWQATP PAERAAILER AADLMEGEIQ PLMGLLVREA GKTFANAIAE VREAVDFLRY YAVQARNDFT NDAHRPLGPV VCISPWNFPL AIFSGQVAAA LAAGNPVLAK PAEQTPLIAA QAVRLLLEAG IPEGVVQLLP GRGETVGAGL VGDERVKGVM FTGSTEVARL LQRNVADRLD SQGRPIPLIA ETGGQNAMIV DSSALTEQVV IDVVSSAFDS AGQRCSALRV LCLQEDSADR VIEMLKGAMA ESRLGNPERL SVDIGPVIDA EAKAGIEKHI QAMRDKGRTV YQVAIAESAE LKRGTYVMPT LIELESFDEL QREIFGPVLH VVRYKRKELG LLIDQINASG YGLTLGVHTR IDETIAKVID NVNAGNVYVN RNIVGAVVGV QPFGGEGLSG TGPKAGGPLY LYRLLSTRPL DAIEKSFVRG DALVAPDTRL REVMSKPLQA LKAWAASSQH AELDVLCGQY AEQSQSGITR QLAGPTGERN SYAILPREHV LCLADDENDL LTQLAAVLAV GSSAVWPETD ISKPLFARLP KEVQARIKLV PDWAKDEVAI DAVLHHGDSD QLRAICQQIA QRSGAIVGVN GLSHGETNVP LERLVIERAL SVNTAAAGGN ASLMTIG
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