Gene PSPTO_5017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5017 
Symbol 
ID1186702 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp5704088 
End bp5708041 
Gene Length3954 bp 
Protein Length1317 aa 
Translation table11 
GC content62% 
IMG OID637396338 
Productbifunctional putA protein 
Protein accessionNP_794750 
Protein GI28872131 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.268901 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCACCA CCACTTTGGG CGTCAAGCTC GACGACCCTA CCCGCGAGCG ATTGAAAGCC 
GCCGCCCATT CGATCGACCG CACGCCGCAC TGGTTGATCA AGCAGGCGAT TTTCAATTAC
CTGGAAAAGC TGGAAAGTGG TGCAACCTTG CTTGAGCTGA ACGGCGCGAC AGGCAAAGAC
AGCGAAGACC GTGGTGAGCT GGCAGAAGAT GCAGGCCTGC AATGCTTTCT GGATTTTGCC
GAAAGCATTC AGCCGCAGTC AGTGCTGCGT GCGGCGATCA CTTCCGCCTA CCGTCGCCCG
GAGCAGGAAG TGGTGCCTAT GCTGCTGGAA CAGGCACGCC TGACAGCGCC TGTCGCCGAA
GCGACCAACA AGCTCGCCGC GTCGATTGCC GAAAAACTGC GCAATCAAAA AAGCGCGGGC
GGGCGCGCAG GCATCGTTCA AGGCCTGCTG CAGGAGTTTT CGCTGTCCTC CCAGGAAGGC
GTTGCCCTGA TGTGTCTGGC TGAAGCACTG CTGCGTATTC CCGACAAAGG CACTCGCGAT
GCCTTGATTC GCGACAAGAT CAGCAACGGC AACTGGCAGC CGCACCTGGG CAACAGCCCG
TCGCTGTTCG TCAACGCAGC CACCTGGGGC CTGCTGCTGA CCGGCAAGCT GGTCGCCACG
CACAACGAAG CAGGCCTGAC CTCCTCGCTG AGCCGGATCA TCGGCAAGCG CGGCGAACCG
ATGATCCGCA AGGGCGTCGA CATGGCCATG CGCCTGATGG GTGAGCAGTT CGTCACCGGC
GAAACCATTG GCGAGGCTCT GGCCAATGCC AGTCGTTTCG AAGCCAAGGG CTTCCGCTAC
TCCTACGACA TGCTGGGTGA AGCAGCGTTG ACCGAACACG ACGCGCAGAA ATATCTGGCG
TCCTACGAGC AGGCCATTCA TTCCATCGGC AAAGCCTCCC ACGGTCGCGG CATCTACGAA
GGCCCGGGTA TTTCCATCAA GCTGTCGGCG CTGCATCCGC GCTACAGCCG CGCTCAGTAC
GAGCGCGTCA TGGACGAGCT CTACCCGCGC CTGCTGTCGC TGACCCTGCT GGCCAAACAG
TACGACATCG GCCTGAACAT CGACGCCGAA GAAGCCGACC GCCTGGAGCT GTCGCTTGAT
CTGCTTGAGC GCCTGTGCTT CGAGCCGCAA CTGACCGGCT GGAACGGTAT CGGTTTCGTG
ATTCAGGCTT ACCAGAAGCG CTGCCCTTAT GTGATCGACT ACGTGATCGA TCTGGCTCGG
CGCAGTCGTC ATCGCCTGAT GATCCGCCTG GTAAAAGGCG CGTACTGGGA CAGCGAAATC
AAGCGTGCGC AGGTTGAAGG TCTGGAAGGC TATCCGGTCT ACACCCGCAA GGTGTACACC
GACGTTTCCT ATATCGCCTG CGCCCGCAAA CTGCTGGCCG CACCGGAAGT CATCTATCCG
CAGTTCGCCA CCCACAACGC CCACACCCTG GCGGCCATCT ACCAGATTGC CGGTCAGAAT
TATTACCCCG GCCAGTACGA GTTCCAGTGC CTGCACGGCA TGGGCGAGCC ACTCTACGAG
CAGGTTGTTG GCAAAGTCGC CGACGGCAAG CTGAACCGTC CGTGCCGCGT GTACGCGCCG
GTTGGCACTC ACGAAACGCT GCTGGCCTAT CTGGTCCGGC GCCTGCTGGA GAACGGCGCC
AACACCTCGT TCGTCAACCG GATTGCCGAC CATTCGATCT CGATTCAGGA ACTCGTCGCC
GATCCGGTCA ACCAGATCGA ACGCATGGCA ACGCAGGAAG GCGGGTTCGG CTTGCCACAC
CCGCGTATTC CGCTGCCGCG CGACCTGTAT GGCACCGAGC GCGCCAACTC CAGCGGCATC
GATATGGCCA ACGAACATCG TCTGGCGTCG CTGTCCTCAG CCCTGCTGTC GACCGCGCAC
AACGACTGGA AAGCTGCGCC AATGCTCGGC TGCCCGGCCA GTGAAGGCAC ACTTGCTGCG
GCGTTGAACC CGTCGGATCT GCGTGACGTG GTCGGCCATG TGCAGGAAGC CTCCTTGCAG
GATGTCGATA ATGCCATCCA GTGCGCCTTG AGCGCCGGCC CGATCTGGCA GGCCACGCCG
CCCGCCGAAC GCGCCGCGAT TCTGGAGCGC GCCGCCGACC TGATGGAAGG CGAGATTCAG
CCGCTGATGG GCCTGCTGGT CCGTGAAGCA GGCAAGACGT TCGCGAACGC CATCGCCGAA
GTGCGTGAAG CGGTGGACTT CCTGCGCTAC TACGCAGTGC AGGCGCGCAA CGACTTCACC
AATGATGCGC ACCGTCCTTT GGGCCCGGTG GTCTGCATCA GCCCATGGAA CTTCCCGCTG
GCAATCTTCA GTGGTCAGGT GGCGGCTGCA TTGGCTGCAG GTAACCCGGT ACTGGCCAAA
CCCGCCGAGC AGACGCCGCT GATTGCAGCT CAGGCGGTAC GCCTGCTGCT TGAAGCCGGG
ATCCCGGAAG GCGTGGTGCA ATTGCTGCCC GGTCGCGGTG AAACCGTCGG GGCCGGGCTG
GTGGGCGATG AGCGCGTCAA GGGCGTGATG TTCACCGGCT CCACCGAAGT CGCCCGCCTG
CTGCAACGCA ATGTCGCCGA TCGCCTCGAC TCTCAGGGTC GCCCTATCCC ACTAATCGCC
GAAACCGGCG GCCAGAACGC AATGATCGTG GACTCCTCGG CGCTGACCGA ACAAGTGGTC
ATCGACGTAG TGTCCTCGGC GTTCGACAGC GCCGGGCAAC GTTGCTCGGC ACTGCGCGTG
CTGTGCCTGC AGGAAGATTC GGCCGATCGC GTCATTGAAA TGCTCAAGGG CGCGATGGCC
GAAAGCCGTC TGGGCAACCC GGAACGCCTG TCCGTGGACA TCGGGCCGGT GATCGATGCC
GAGGCCAAGG CCGGCATCGA GAAACACATC CAGGCGATGC GCGACAAGGG CCGCACGGTT
TATCAGGTTG CCATCGCCGA AAGCGCCGAA CTCAAGCGCG GCACCTACGT GATGCCAACC
TTGATCGAGC TGGAAAGCTT CGATGAACTG CAACGCGAAA TCTTCGGCCC GGTGCTGCAC
GTGGTGCGCT ACAAGCGCAA GGAGCTCGGC CTTTTGATCG ACCAGATCAA TGCATCCGGC
TACGGCCTGA CGCTCGGCGT TCACACGCGC ATCGACGAAA CCATCGCCAA GGTCATCGAT
AACGTCAACG CCGGTAACGT CTACGTCAAC CGCAACATCG TCGGTGCCGT GGTCGGGGTT
CAGCCGTTTG GCGGCGAAGG CCTGTCTGGC ACCGGCCCTA AAGCCGGTGG CCCGCTGTAC
CTGTATCGCC TGTTGTCGAC ACGACCGCTG GATGCCATCG AAAAATCGTT TGTGCGTGGC
GATGCATTGG TTGCACCTGA TACACGTCTG CGCGAAGTGA TGAGCAAACC GCTGCAAGCC
TTGAAGGCCT GGGCAGCGAG CAGCCAGCAC GCCGAACTGG ATGTGCTGTG CGGCCAGTAC
GCCGAGCAAT CGCAAAGCGG CATCACCCGC CAACTGGCCG GCCCGACCGG CGAGCGCAAC
AGCTACGCCA TTCTGCCACG CGAACACGTG CTGTGCCTGG CTGACGACGA GAACGACCTG
CTGACCCAAC TGGCAGCCGT ACTGGCTGTC GGCAGCTCAG CCGTATGGCC GGAAACCGAC
ATCAGCAAAC CGCTCTTCGC TCGCCTGCCA AAAGAAGTTC AGGCTCGCAT CAAGCTGGTG
CCTGACTGGG CCAAGGACGA AGTCGCTATC GACGCTGTTC TGCACCACGG CGACTCCGAC
CAATTGCGCG CCATCTGCCA ACAGATCGCC CAGCGCAGCG GCGCAATCGT CGGCGTCAAC
GGTCTGTCCC ACGGCGAAAC CAACGTCCCT CTGGAACGCC TGGTGATCGA ACGGGCACTG
AGCGTCAACA CGGCGGCTGC GGGGGGCAAT GCGAGCTTGA TGACGATAGG ATGA
 
Protein sequence
MATTTLGVKL DDPTRERLKA AAHSIDRTPH WLIKQAIFNY LEKLESGATL LELNGATGKD 
SEDRGELAED AGLQCFLDFA ESIQPQSVLR AAITSAYRRP EQEVVPMLLE QARLTAPVAE
ATNKLAASIA EKLRNQKSAG GRAGIVQGLL QEFSLSSQEG VALMCLAEAL LRIPDKGTRD
ALIRDKISNG NWQPHLGNSP SLFVNAATWG LLLTGKLVAT HNEAGLTSSL SRIIGKRGEP
MIRKGVDMAM RLMGEQFVTG ETIGEALANA SRFEAKGFRY SYDMLGEAAL TEHDAQKYLA
SYEQAIHSIG KASHGRGIYE GPGISIKLSA LHPRYSRAQY ERVMDELYPR LLSLTLLAKQ
YDIGLNIDAE EADRLELSLD LLERLCFEPQ LTGWNGIGFV IQAYQKRCPY VIDYVIDLAR
RSRHRLMIRL VKGAYWDSEI KRAQVEGLEG YPVYTRKVYT DVSYIACARK LLAAPEVIYP
QFATHNAHTL AAIYQIAGQN YYPGQYEFQC LHGMGEPLYE QVVGKVADGK LNRPCRVYAP
VGTHETLLAY LVRRLLENGA NTSFVNRIAD HSISIQELVA DPVNQIERMA TQEGGFGLPH
PRIPLPRDLY GTERANSSGI DMANEHRLAS LSSALLSTAH NDWKAAPMLG CPASEGTLAA
ALNPSDLRDV VGHVQEASLQ DVDNAIQCAL SAGPIWQATP PAERAAILER AADLMEGEIQ
PLMGLLVREA GKTFANAIAE VREAVDFLRY YAVQARNDFT NDAHRPLGPV VCISPWNFPL
AIFSGQVAAA LAAGNPVLAK PAEQTPLIAA QAVRLLLEAG IPEGVVQLLP GRGETVGAGL
VGDERVKGVM FTGSTEVARL LQRNVADRLD SQGRPIPLIA ETGGQNAMIV DSSALTEQVV
IDVVSSAFDS AGQRCSALRV LCLQEDSADR VIEMLKGAMA ESRLGNPERL SVDIGPVIDA
EAKAGIEKHI QAMRDKGRTV YQVAIAESAE LKRGTYVMPT LIELESFDEL QREIFGPVLH
VVRYKRKELG LLIDQINASG YGLTLGVHTR IDETIAKVID NVNAGNVYVN RNIVGAVVGV
QPFGGEGLSG TGPKAGGPLY LYRLLSTRPL DAIEKSFVRG DALVAPDTRL REVMSKPLQA
LKAWAASSQH AELDVLCGQY AEQSQSGITR QLAGPTGERN SYAILPREHV LCLADDENDL
LTQLAAVLAV GSSAVWPETD ISKPLFARLP KEVQARIKLV PDWAKDEVAI DAVLHHGDSD
QLRAICQQIA QRSGAIVGVN GLSHGETNVP LERLVIERAL SVNTAAAGGN ASLMTIG