Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5015 |
Symbol | |
ID | 1186700 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5701382 |
End bp | 5702053 |
Gene Length | 672 bp |
Protein Length | 223 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637396336 |
Product | lyase, putative |
Protein accession | NP_794748 |
Protein GI | 28872129 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCGATC TCGGATCGTA CCAACTCAGC ATTCCAGTGG GCTCACCCCC CAAGACCATT ACAACCGCTC AGCTTGTGAA AGGTTATGAC GGCAAATACT TCAAATCCAA ATCGGACTCC ATTGTGTTCT GGTCACCGGT AACCGGGACC AAGACCGAAA ACGCCAAGTA TTCACGCAGC GAGTTACGGG AAACATGGTC CGACGGCACG CTGCGTAACT GGGTGTACCC GGATGCGGAC AATTACCTGA ACGCCAAACT GGAAGTCGAT CAGGTACCTT CGTCGGGCAA GATCGTGATC GGCCAGATCC ACGCCTACGA AAGCACCGAA CCGCTTCTGA AAGTCGAGTA CCAGTACAAG GAAGACACCA AGACTGGCGA CATCGTTGCG AAAGTTCGCA ATCGTTATGA TGACGACGAC AGCAAGGTCT ATACGATAGT CGAAGGTGTG AAGCTGAATC AGACCTTCAA TTACGTCATT CACCTGAGCA AGGGCGGCAA ATTGACGGTC AGCATCAACG ACACCGACTG GAGCAAGAGC ATCAGCAAGA CCTGGCGCGA CAAGCCGCTG TACTTCAAGG CAGGTGTTTA TACCCAGGAC AATACCGGGT ACACCTCGGA GGGCGGCAAG GCCACGTTCT ATAACCTTGA TATCGATCAC AACAAAAGCT GA
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Protein sequence | MIDLGSYQLS IPVGSPPKTI TTAQLVKGYD GKYFKSKSDS IVFWSPVTGT KTENAKYSRS ELRETWSDGT LRNWVYPDAD NYLNAKLEVD QVPSSGKIVI GQIHAYESTE PLLKVEYQYK EDTKTGDIVA KVRNRYDDDD SKVYTIVEGV KLNQTFNYVI HLSKGGKLTV SINDTDWSKS ISKTWRDKPL YFKAGVYTQD NTGYTSEGGK ATFYNLDIDH NKS
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