| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5007 |
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| Symbol | dbpA |
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| ID | 1186692 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5691491 |
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| End bp | 5692870 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637396328 |
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| Product | ATP-independent RNA helicase DbpA |
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| Protein accession | NP_794740 |
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| Protein GI | 28872121 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACTAACA CCGCTTTCAA TTCTCTGCCT CTGTCTGCTG CCATGCTGGC TAACCTGGAG
TCGCTTGGTT ATGCCGAAAT GACGCCGATT CAGGCGCAGA GCCTGCCGGT GATCCTCAAG
GGCATGGACC TGATCGCGCA AGCCAAGACC GGTAGCGGCA AGACCGCTGC GTTCGGCATC
GGCCTGCTCA ACCCGATCAA CCCGCGCTTC TTCGGCTGCC AGGCACTGGT CATGTGCCCG
ACCCGCGAGC TGGCGGATCA GGTGGCCAAG GAAATCCGTC GTCTGGCCCG CTCGGAAGAC
AACATCAAAG TGCTGACCCT TTGCGGCGGT GTGTCTTTTG GCCCGCAGAT CGGCTCGCTG
GAGCACGGCG CGCACATCAT CGTTGGCACG CCAGGCCGCA TTCAGCAGCA TTTGCGCAAA
GGCTCGCTGG TGCTTGACGG CCTGAACACG CTGATTCTCG ATGAAGCCGA TCGCATGCTG
GACATGGGTT TCTACGATTC CATCGCCGAT ATCATCGAGC AGACCCCGCA GCGCCGCCAA
ACCCTGCTGT TTTCGGCCAC TTACCCGGTC GGTATCAAGC AACTGTCGTC GAAGTTCATG
CGCGATCCAC AGACTGTCAA AGTCGAAGCG CTGCACGCCG ACAGCCAGAT CGAGCAGATT
TTCTACGAGA TCTCCCCCGA GCAGCGCCTG GAAGCCGTGG TCAAGGTACT CGGCCATTTC
CGTCCAACGT CCTGCGTCGC GTTCTGTTTC ACCAAGCAGC AGGTTCAGGA AGTGGTCGAC
CACCTGACCG CCAAAGGCAT GTCTGCGGTC GGCCTGCATG GCGATCTGGA ACAGCGTGAC
CGTGATCAGG TGCTGGCGAT GTTCGCCAAC CGCAGTACTT CGGTACTGGT CGCCACCGAC
GTAGCCGCGC GCGGTCTGGA CATCGATGCA CTGGATATGG TGCTCAACGT CGAACTGGCC
CGCGATTCGG AAATCCACAT TCACCGTGTA GGCCGTACCG GTCGCGCAGG CGAGACAGGC
ATCGCGGTAA GCCTCGTGGC ACCGTCGGAA AGCCAGCGCG CCCGCGCCAT CGAAGAATTG
CAGAAAGCCC CGTTGAACTG GCAGCAGTAC GACAGCCTGA GCATCAAGGA AGGCGGCAAG
CTGCTGCCCG CCATGACCAC GCTGTGCATC GGTTCCGGGC GCAAGGACAA ACTGCGTCCG
GGCGACATCC TCGGCGCACT GACCGGCGAA GCGGGTATTG CGGGCACCCA GGTCGGCAAG
ATCGCAATCT TCGACTTTCA GGCCTACGTC GCCGTCGAAC GCAGCATGGC CAAACAGGCG
CTGGAGCGAC TGAACAACGG CAAGATCAAA GGCAAATCGC TGCGCGTACG AATCCTCTGA
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| Protein sequence | MTNTAFNSLP LSAAMLANLE SLGYAEMTPI QAQSLPVILK GMDLIAQAKT GSGKTAAFGI
GLLNPINPRF FGCQALVMCP TRELADQVAK EIRRLARSED NIKVLTLCGG VSFGPQIGSL
EHGAHIIVGT PGRIQQHLRK GSLVLDGLNT LILDEADRML DMGFYDSIAD IIEQTPQRRQ
TLLFSATYPV GIKQLSSKFM RDPQTVKVEA LHADSQIEQI FYEISPEQRL EAVVKVLGHF
RPTSCVAFCF TKQQVQEVVD HLTAKGMSAV GLHGDLEQRD RDQVLAMFAN RSTSVLVATD
VAARGLDIDA LDMVLNVELA RDSEIHIHRV GRTGRAGETG IAVSLVAPSE SQRARAIEEL
QKAPLNWQQY DSLSIKEGGK LLPAMTTLCI GSGRKDKLRP GDILGALTGE AGIAGTQVGK
IAIFDFQAYV AVERSMAKQA LERLNNGKIK GKSLRVRIL
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