| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5006 |
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| Symbol | aceF |
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| ID | 1186691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5689482 |
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| End bp | 5691128 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637396327 |
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| Product | pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase |
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| Protein accession | NP_794739 |
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| Protein GI | 28872120 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
[COG1038] Pyruvate carboxylase |
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| TIGRFAM ID | [TIGR01348] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGTGAGT TAATTCGCGT ACCCGACATC GGCAACGGTG AAGGCGAAGT CATTGAATTG
ATGGTCAAGG TCGGTGATCG CATCGAAGCC GACCAGAGCG TTCTGACGCT TGAATCGGAC
AAGGCGAGCA TGGAAATCCC TGCTCCCAAG GCTGGCGTCA TCAAGGCCAT GAAGGTCAAG
CTGGGCGACC GCCTGAAAGA AGGCGACGAG CTGTTCGAGC TGGAAGTGGA AGGCGAAGCC
TCTGCCGCGC CGGCACCTGC TGCCGAACCT GCAGCCGCCG CGGCCCCTGC CGCTGCTGAA
AAACCTGCCG AAGCCGCACC CGCTGCTGCC GAGCCAGCTC CGGCTGCCGC CGCCACCGTT
CAAGACATTC ATGTTCCGGA CATCGGTTCG TCAGGCAAGG CCAAGATCAT CGAACTGATG
GTCAAGGTCG GTGACAGCAT CACGGCTGAT CAATCGTTGA TCACCCTTGA GTCCGACAAG
GCCAGCATGG AGATCCCGTC TCCTGCCGCA GGCGTTATCG AAAGCATCGA AGTCAAGCTG
GACCAGGAAG TCGGCACCGG CGACCTGATC CTGAAACTGA AAGTCGCAGG CGCAGCGCCT
GCTGCTGCAC CGGCGCCTGC CGCCAGCGCA CCGGCCGCCG CACCGGCCAA GGCTGAAGCC
GCTGCTCCGG CCGCTGCTCC TGCACCTAAA GCCGAAGCTG CACCCGCTCC GGCCGCACCG
GCCAAAGACG GCGCCAAGGT TCACGCAGGC CCGGCTGTTC GTCAGCTGGC ACGCGAGTTC
GGCGTCGAGC TGAGCGCAGT CAGCGCCACC GGCCCGCACG GTCGCGTACT GAAAGAAGAC
GTTCAGGTTT ACGTCAAGGC CATGATGCAG AAGGCCAAGG AAGCTCCAGC AGGCGGCGCA
AGCGGCGGCT CGGGCATCCC GCCGATTCCG GAAGTCGATT TCAGCCGTTT TGGCGAAATC
GAAGAAGTGC CAATGACTCG CCTGATGCAA CTGGGTGCGT CGGGTCTGCA TCGCAGCTGG
CTGAACATCC CGCACGTCAC GCAATTCGAC CAGGCCGACA TCACCGACCT GGAAGCTTTC
CGTGTTGCGC AGAAAGGCGC TGCCGAGAAA GCTGGCGTCA AGCTGACCGT GCTGCCGCTG
CTGCTCAAGG CTTGTGCGCA TCTGCTCAAG GAACTGCCGG ACTTCAACGC TTCGCTGGCA
CCCAGCGGCA AGGCTGTGAT CCGCAAGAAG TACGTGCACA TCGGCTTCGC CGTGGACACC
CCGGACGGCC TGCTGGTCCC GGTCATCCGC GACGTCGATC AGAAGAGCCT GCTGCAACTG
GCAGCCGAAG CAGCCGTACT GGCTGAAAAG GCGCGCAGCA AGAAACTGAC CGCAAACGAC
ATGCAGGGCG CGTGCTTCAC CATCTCCAGC CTCGGCCACA TTGGCGGCAC CGGCTTCACG
CCGATCGTCA ACGCGCCGGA AGTGGCGATC CTCGGTGTTT CCAAGGCAAC CATCCAGCCT
GTCTGGGACG GCAAAGCCTT CCAGCCTAAA CTGATGCTGC CGCTGTCGCT GTCCTACGAT
CACCGCGTGA TCAACGGCGC AGCTGCTGCC CGCTTCACCA AGCGCTTGAG CGAATTGCTG
ACGGACATCC GCACAATCCT GCTGTAA
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| Protein sequence | MSELIRVPDI GNGEGEVIEL MVKVGDRIEA DQSVLTLESD KASMEIPAPK AGVIKAMKVK
LGDRLKEGDE LFELEVEGEA SAAPAPAAEP AAAAAPAAAE KPAEAAPAAA EPAPAAAATV
QDIHVPDIGS SGKAKIIELM VKVGDSITAD QSLITLESDK ASMEIPSPAA GVIESIEVKL
DQEVGTGDLI LKLKVAGAAP AAAPAPAASA PAAAPAKAEA AAPAAAPAPK AEAAPAPAAP
AKDGAKVHAG PAVRQLAREF GVELSAVSAT GPHGRVLKED VQVYVKAMMQ KAKEAPAGGA
SGGSGIPPIP EVDFSRFGEI EEVPMTRLMQ LGASGLHRSW LNIPHVTQFD QADITDLEAF
RVAQKGAAEK AGVKLTVLPL LLKACAHLLK ELPDFNASLA PSGKAVIRKK YVHIGFAVDT
PDGLLVPVIR DVDQKSLLQL AAEAAVLAEK ARSKKLTAND MQGACFTISS LGHIGGTGFT
PIVNAPEVAI LGVSKATIQP VWDGKAFQPK LMLPLSLSYD HRVINGAAAA RFTKRLSELL
TDIRTILL
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