Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4988 |
Symbol | |
ID | 1186673 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5661555 |
End bp | 5662511 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637396309 |
Product | hypothetical protein |
Protein accession | NP_794721 |
Protein GI | 28872102 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0438] Glycosyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.630907 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGTTC TACTTCTGGT CCAGAAAGAG CAGCGGGCCA TTCTCGACCG TCTTTATGAA GGCATCGCCG CGTATTGTGA GTGCGAGGTG CGTTGGCTGA GCTCCGATGA GCAGCGCAAC CTGCGTGGCT ATTTCCGCCG TGAAGTGGAT GTCGAGCGTT ATGACCGGAT CGTGTTTTTT CTGCGCTTCA AGCAGGAAGT CCGTCAGGTC GGGTTCATCC GCACGATTCC CAATCTGGTC ATCCTTGAAC ACGATGCCTA CCAGAACTAC ATCCCCTGCA AGTACACCGG CAAGTTCAGC GCGCACTATC GCAAGCTGCC CTGGGCGCGG GTGATCTGTT CGGGCTTCAT GGTCAGCGAA CGCCTGCGCG AAGAAGGCTT TGATGCGGTG TTCGTGCCCA AAGGCTATGA CCAGAGCCTG TTGCAGTTGC AAACCCGCGA GCGCGATATC GAACTGGCCT TTGTGGGCAG CACCAACAGT GTGGCCTACA GCGGCCGCAA GGCATTGCTC GATGAGCTGG GCCAGGTCGA GAACCTGCTC GTCACGCGCA CCAAATCCGG GGAAGAGTAT TGCGACACCC TCAACCGCAT CCGCTTTTTC GTCAGTGCCG ATGTCGGTAT GGGCGAATAC ATGATCAAGA ATTTCGAGGC CATGGCTTGC GGTTGCGTGC TGCTGGCCTT TGATCAGGGC GCCGAAGAAA ATCGCGCGCT GGGTTTTGTG GACATGCATA ACATCGTGCT TTACCGCGAC ATTCCACAGC TTCGCGAAAA GCTGTCGCAG TTGCGCGAGA ACAACCTGCT GGCCGGCGAA ATATCCCGTA ATGGGCAGAC TTTGGTCGAG GAACGCTTTA CATTCCACGC ACTTGGGAAA GCCATCGTGG ACGCCATGCA AGCGCCGCTG CGCAGTATGC CCGCGATCAG TTGGGTCGAC CGTCTGCGGT CACGCTTGGG CTGGTAA
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Protein sequence | MKVLLLVQKE QRAILDRLYE GIAAYCECEV RWLSSDEQRN LRGYFRREVD VERYDRIVFF LRFKQEVRQV GFIRTIPNLV ILEHDAYQNY IPCKYTGKFS AHYRKLPWAR VICSGFMVSE RLREEGFDAV FVPKGYDQSL LQLQTRERDI ELAFVGSTNS VAYSGRKALL DELGQVENLL VTRTKSGEEY CDTLNRIRFF VSADVGMGEY MIKNFEAMAC GCVLLAFDQG AEENRALGFV DMHNIVLYRD IPQLREKLSQ LRENNLLAGE ISRNGQTLVE ERFTFHALGK AIVDAMQAPL RSMPAISWVD RLRSRLGW
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