Gene PSPTO_4984 details

Gene Information

• Locus tag: PSPTO_4984
• Symbol: msbA
• ID: 1186669
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 5656790
• End bp: 5658664
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637396305
• Product: lipid A ABC transporter, ATP-binding/permease protein
• Protein accession: NP_794717
• Protein GI: 28872098
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components
• TIGRFAM ID: [TIGR02203] lipid A export permease/ATP-binding protein MsbA

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTACCGC AGCAGGCAGC CGCGAAAACC GCTGTGATAC AATTCGGCCT CTTTTTAATA 
CAACGGACTC TCATGACAAC TCCCGAATCG TCCGCAACTT CCAGCGTGAA AATCTATTTC 
CGCCTGTTGT CTTATGTGCG TCCGTATGTG GGCATTTTTC TGCTCAGCAT CCTTGGCTTC 
GTGATCTTTG CCTCGACTCA GCCGATGCTC GCCGGCATCC TCAAATACTT TGTCGATGGC 
CTGAGCAACC CTGAAGCGGT GCTGTTCCCC AACGTGCCTT ATCTGCGCGA ACTGCAACTG 
TTGCAGGCGG TGCCGCTGCT GATCGTGCTG ATCGCCGCAT GGCAGGGGCT TGGTTCGTTC 
CTGGGCAACT ACTTTCTGGC CAAGGTTTCC CTGGGGCTGG TGCACGACCT GCGCGTTGAG 
CTGTTCAACA AGTTGCTGGT ATTGCCCAAT CGTTATTTCG ACACGACCAA TTCCGGCCAT 
CTGATTTCGC GCATCACCTT CAACGTCACC ATGGTGACCG GCGCTGCCAC CGATGCCATC 
AAGGTGGTGA TTCGCGAAGG CCTGACGGTG GTGTTCCTGT TCATCTATCT GCTGATGATG 
AACTGGAAAC TGACCCTGGT CATGCTCGCC ATCCTGCCGC TGATTGCCGT GATGGTGAGC 
AGCGCGAGCA AGAAATTTCG CAAGCAGAGC AAAAAGATTC AAGTGGCGAT GGGCGATGTC 
ACCCACGTTG CGTCGGAAAC CATTCAGGGC TATCGCGTGG TGCGCAGCTT TGGTGGCGAA 
GCTTACGAGC AGAACCGTTT CGCCGAAGCC AGTGACAGCA ACACCCGCAA GCAACTGCGC 
ATGACCAAGA CCGGCGCAAT CTACACGCCG ATGCTGCAAC TGGTCATCTA CAGCGCCATG 
GCCGTGCTGA TGTTTCTGGT GCTGTTCCTG CGCGGCGACG CGACGGCGGG CGATCTGGTG 
GCTTACATCA CCGCTGCCGG TCTGTTGCCC AAGCCAATTC GCCAGCTGTC GGAAGTCAGC 
TCGACCATCC AGAAAGGCGT GGCCGGTGCC GAAAGCATCT TCGAGCAACT GGACGTGGAG 
GAAGAGGTCG ACACCGGTAC GATCGAGCTT GATCGCGTCA GCGGCCATCT GGAGGTGAAG 
AACCTCAGCT TCTTCTACCC GCAGACCGAG CGTCAGGTGT TGAACGACAT CAGTTTCTCT 
GCAGCGCCCG GGCAGATGAT CGCGCTGGTG GGGCGTTCCG GAAGCGGCAA ATCGACTCTG 
GCCAACCTGA TACCGCGTTT TTACGGGCAC GAGATGGGCA ACATCCTGCT CGATGGCGTC 
GAAATCAACG ATTACCGTTT GCGCAATCTG CGCAAGCACA TCGCCCAGGT CAATCAGAAC 
GTCACGCTGT TCAATGACTC CATTGCCAAC AACATTGCCT ATGGCGATCT GGCCGGTGCG 
CCGCGTGCCG ACATCGAAGC GGCCGCCGCC GACGCTTACG CCAAGGAGTT CATCGACCAG 
TTGCCGCAAG GGTTCGACAC TCAGGTCGGC GAAAACGGTG TGCTGCTGTC AGGTGGCCAG 
CGACAACGCC TGGCCATCGC TCGCGCGTTG CTCAAGAACG CGCCGCTGCT GATTCTCGAT 
GAAGCCACGT CGGCGCTGGA CACCGAGTCC GAGCGGCATA TCCAGGCCGC ACTGGATCAC 
GTCATGAAGG GCCGTACCAC ACTGGTCATC GCCCACCGCC TTTCGACCAT CGAAAAGGCC 
GACATGATTC TGGTCATGGA TGCCGGGAAG ATCGTCGAGC GCGGTACTCA TACAGAGTTG 
CTGGCGCAGA ACGGTTACTA CGCCCGCCTG CACGCCATGG GGCTGGACGA GCCAGCGCCT 
GCCGGCGCGG TTTGA 

 

Protein sequence

MLPQQAAAKT AVIQFGLFLI QRTLMTTPES SATSSVKIYF RLLSYVRPYV GIFLLSILGF 
VIFASTQPML AGILKYFVDG LSNPEAVLFP NVPYLRELQL LQAVPLLIVL IAAWQGLGSF 
LGNYFLAKVS LGLVHDLRVE LFNKLLVLPN RYFDTTNSGH LISRITFNVT MVTGAATDAI 
KVVIREGLTV VFLFIYLLMM NWKLTLVMLA ILPLIAVMVS SASKKFRKQS KKIQVAMGDV 
THVASETIQG YRVVRSFGGE AYEQNRFAEA SDSNTRKQLR MTKTGAIYTP MLQLVIYSAM 
AVLMFLVLFL RGDATAGDLV AYITAAGLLP KPIRQLSEVS STIQKGVAGA ESIFEQLDVE 
EEVDTGTIEL DRVSGHLEVK NLSFFYPQTE RQVLNDISFS AAPGQMIALV GRSGSGKSTL 
ANLIPRFYGH EMGNILLDGV EINDYRLRNL RKHIAQVNQN VTLFNDSIAN NIAYGDLAGA 
PRADIEAAAA DAYAKEFIDQ LPQGFDTQVG ENGVLLSGGQ RQRLAIARAL LKNAPLLILD 
EATSALDTES ERHIQAALDH VMKGRTTLVI AHRLSTIEKA DMILVMDAGK IVERGTHTEL 
LAQNGYYARL HAMGLDEPAP AGAV