| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4983 |
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| Symbol | |
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| ID | 1186668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5655241 |
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| End bp | 5656665 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637396304 |
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| Product | lipopolysaccharide biosynthesis protein RfaE |
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| Protein accession | NP_794716 |
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| Protein GI | 28872097 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2870] ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase |
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| TIGRFAM ID | [TIGR00125] cytidyltransferase-related domain
[TIGR02198] rfaE bifunctional protein, domain I
[TIGR02199] rfaE bifunctional protein, domain II |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCTAT CCATGCCGCG CTTTGATCAG GCCCCTGTCC TGGTGGTTGG CGATGTCATG
CTCGACAGAT ACTGGCATGG TGGTACCTCG CGTATTTCCC CCGAAGCGCC GGTGCCTGTG
GTCAAGGTCG ATCAGATCGA AGACCGTCCG GGCGGTGCCG CCAACGTTGC CTTGAACATC
GCAGCCCTGG GCGCTCCGGC GTCGCTGGTC GGTGTGACCG GCGACGACGA GGCTGCAGAA
AGCCTGACCA ACAGCCTGAA AGCTGCGGGT GTCGTGGCGC GCTTTCAGCG TATTGCCGAT
CAGCCGACCA TCGTCAAACT GCGTGTCATG AGTCGCCATC AGCAATTGCT GCGTATCGAC
TTCGAAGAAC CGTTCAACAC GGATCCGCTG GCCCTGAGCG CAGAGGTTTA CAGCCTGCTG
GACGGCATCA AGGTGCTGGT CCTGTCCGAT TACGGCAAAG GTGCGTTGAA AAACCATCAG
GCATTGATTC AGGCAGCACG CAAACGCGGT ATTCCGGTGC TGGCTGATCC CAAGGGCAAG
GACTTCGCGA TTTATCGCGG GGCCAGCCTG ATCACGCCGA ACCTCAGCGA ATTCGAAGCC
ATCGTCGGCC ATTGTGAAGA CGAAGCACAA CTGGTCACCA AGGGTGCGCA GTTGATGCAG
GAACTTGATC TGGGCGCCTT GCTGGTGACC CGTGGCGAGC ACGGCATGAC CCTGCTGCGT
CCTGACCAGC AGGCCCTGCA CCTGCCAGCT CGCGCTCGTG AAGTGTTCGA CGTCACTGGC
GCTGGCGACA CGGTCATTTC TACCCTGGCG GCGGCCATAG CGGCGGGCGA GGAACTGCCG
CATGCGGTGG CGCTGGCCAA TCTGGCGGCA GGCATTGTGG TCGGCAAACT CGGTACAGCG
GCCATCAGCG CACCGGAACT GCGTCGCGCC ATCCAGCGTG AAGAAGGCTC CGAGCGCGGC
GTGCTGGGCC TGGAGCAATT GCTGCTGGCG GTCGATGACG CGCGTGCGCA CAAGGAAAAA
ATCGTTTTCA CCAATGGCTG CTTCGACATC CTCCACGCAG GCCATGTGAC CTACCTGGAG
CAGGCGCGCG CGCAAGGTGA TCGTCTGATC GTAGCGGTCA ACGATGACGC CTCCGTCAGC
CGTCTCAAAG GCCCGGGCCG CCCGATCAAC AGCGTTGACC GGCGCATGGC CGTACTGGCC
GGGCTGGGCG CGGTGGACTG GGTCATTAGC TTCCCTGAAG GCACCCCGGA AAACCTCCTG
ACCCACGTCA AACCCGACGT ACTGGTCAAA GGCGGTGATT ACGGAATCGA TCAGGTGGTC
GGTGCCGACA TCGTCCAGGC CTATGGCGGA GAAGTGCGGG TGTTGGGGCT GGTGGAAAAC
AGCTCGACCA CCGCGATCGT CGAAAAGATT CGAGGGCAGG GGTAG
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| Protein sequence | MKLSMPRFDQ APVLVVGDVM LDRYWHGGTS RISPEAPVPV VKVDQIEDRP GGAANVALNI
AALGAPASLV GVTGDDEAAE SLTNSLKAAG VVARFQRIAD QPTIVKLRVM SRHQQLLRID
FEEPFNTDPL ALSAEVYSLL DGIKVLVLSD YGKGALKNHQ ALIQAARKRG IPVLADPKGK
DFAIYRGASL ITPNLSEFEA IVGHCEDEAQ LVTKGAQLMQ ELDLGALLVT RGEHGMTLLR
PDQQALHLPA RAREVFDVTG AGDTVISTLA AAIAAGEELP HAVALANLAA GIVVGKLGTA
AISAPELRRA IQREEGSERG VLGLEQLLLA VDDARAHKEK IVFTNGCFDI LHAGHVTYLE
QARAQGDRLI VAVNDDASVS RLKGPGRPIN SVDRRMAVLA GLGAVDWVIS FPEGTPENLL
THVKPDVLVK GGDYGIDQVV GADIVQAYGG EVRVLGLVEN SSTTAIVEKI RGQG
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