Gene PSPTO_4976 details

Gene Information

• Locus tag: PSPTO_4976
• Symbol: thiC
• ID: 1186661
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 5646584
• End bp: 5648473
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637396297
• Product: thiamin biosynthesis protein ThiC
• Protein accession: NP_794709
• Protein GI: 28872090
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0422] Thiamine biosynthesis protein ThiC
• TIGRFAM ID: [TIGR00190] thiamine biosynthesis protein ThiC

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTACAA AACCAAAAAA CGCAGCCCAT TTGAGCGAGT CGGCACAAGT CGATTCCGGA 
TCGGTACAGC CGTTTACCCG TTCGCAGAAA ATCTACGTTC AGGGCTCACG CCCGGACATC 
CGCGTGCCGA TGCGCGAAGT GACTCTGGAT GTCACGCCGA CGGACTTTGG CGGCGAGATC 
AACGCGCCGG TTACCGTTTA TGACACGTCA GGCCCGTACA CCGACCCCAA CGTGATCATC 
GATGTGCGCA AAGGCCTGGC GGATGTTCGC TCGCCGTGGA TCGACTCGCG CAATGACACC 
GAGCGCCTGC CGGGCTTGAG TTCCCACTTC GGCCAGCAGC GCCTGAGTGA CGCCGAACTG 
ACCGCGCTGC GCTTTGCCCA TGTGCGCAAT CCGCGTCGCG CCAAGGCGGG CGCCAACGTC 
AGTCAGATGC ACTATGCGCG TCAGGGGATC ATCACTGCCG AGATGGAATA CGTTGCCATC 
CGCGAGAACA TGAAACTTCA GGAAGCCCGC GCCGCAGGCC TGCTGACCCA GCAGCACGCC 
GGGCACAGCT TCGGGGCGAG CATTCCGAAG GAGATCACCG CCGAGTTCGT GCGCGAGGAA 
ATCGCCCGGG GTCGAGCCAT CATTCCGGCC AACATCAACC ATGTCGAGCT GGAACCGATG 
ATCATCGGCC GTAACTTCCT GGTGAAGATC AACGGCAACA TCGGCAACAG TGCGCTGGGT 
TCTTCCATCG AAGAAGAAGT CGCCAAACTG ACCTGGGGCA TTCGCTGGGG TTCGGACACG 
GTCATGGACC TGTCCACCGG CAAGCACATT CACGAAACCC GCGAATGGAT CATCCGTAAC 
TCGCCGGTGC CGATCGGTAC GGTGCCGATC TATCAGGCGC TGGAAAAAGT CGGCGGCGCG 
GCCGAGGATC TGACCTGGGA GCTGTTCCGC GACACGTTGA TCGAACAGGC CGAGCAGGGC 
GTCGATTACT TCACCATTCA CGCCGGTGTG CTGCTGCGTT ACGTACCGCT GACCGCCAAG 
CGCGTGACCG GGATTGTCAG CCGTGGTGGT TCGATCATGG CCAAGTGGTG CCTGGCGCAT 
CACCAGGAAA ACTTCCTGTA CACCCATTTC GAAGACATCT GCGAAATCAT GAAGGCCTAC 
GACGTCAGCT TCTCGCTGGG CGATGGCTTG CGCCCCGGCT CGATTGCCGA CGCCAACGAT 
GCGGCGCAGT TCGGTGAGCT GGAAACCCTC GGCGAACTGA CCAAGATTGC CTGGAAACAC 
GACTTGCAGA CCATGATCGA AGGCCCAGGC CACGTGCCGA TGCAGTTGAT CAAAGAGAAC 
ATGGACAAGC AGCTGGAGTG CTGCGACGAA GCGCCGTTCT ACACCCTCGG CCCGCTGACC 
ACTGATATTG CACCGGGTTA TGACCACATC ACCTCGGGCA TCGGCGCGGC GATGATCGGC 
TGGTTCGGTT GCGCCATGCT GTGTTATGTC ACACCCAAGG AACACCTGGG TTTGCCGAAC 
AAGGATGACG TGAAGACCGG CATCATCACC TACAAGATCG CGGCCCACGC AGCGGACCTG 
GCCAAAGGGC ATCCTGGCGC GCAGATTCGC GACAACGCGC TGAGCAAGGC GCGTTTCGAG 
TTCCGCTGGG AAGACCAGTT CAACCTCGGC CTGGACCCGG ACACTGCGCG TTCATACCAC 
GATGAAACCC TGCCCAAGGA CTCGGCCAAG GTCGCGCATT TCTGCTCCAT GTGCGGGCCG 
AAATTCTGCT CGATGAAAAT CACCCAGGAA GTACGTGAAT ACGCCGCCAA TCAGCGCATT 
GAAGCAGTGG ATGTCGACGT CGCCAGGGGC CTTGCCGAAC AGGCCGAGCG CTTCAAGCAG 
GAAGGCAGCC AGTTGTACAA GAAGGTGTAG 

 

Protein sequence

MSTKPKNAAH LSESAQVDSG SVQPFTRSQK IYVQGSRPDI RVPMREVTLD VTPTDFGGEI 
NAPVTVYDTS GPYTDPNVII DVRKGLADVR SPWIDSRNDT ERLPGLSSHF GQQRLSDAEL 
TALRFAHVRN PRRAKAGANV SQMHYARQGI ITAEMEYVAI RENMKLQEAR AAGLLTQQHA 
GHSFGASIPK EITAEFVREE IARGRAIIPA NINHVELEPM IIGRNFLVKI NGNIGNSALG 
SSIEEEVAKL TWGIRWGSDT VMDLSTGKHI HETREWIIRN SPVPIGTVPI YQALEKVGGA 
AEDLTWELFR DTLIEQAEQG VDYFTIHAGV LLRYVPLTAK RVTGIVSRGG SIMAKWCLAH 
HQENFLYTHF EDICEIMKAY DVSFSLGDGL RPGSIADAND AAQFGELETL GELTKIAWKH 
DLQTMIEGPG HVPMQLIKEN MDKQLECCDE APFYTLGPLT TDIAPGYDHI TSGIGAAMIG 
WFGCAMLCYV TPKEHLGLPN KDDVKTGIIT YKIAAHAADL AKGHPGAQIR DNALSKARFE 
FRWEDQFNLG LDPDTARSYH DETLPKDSAK VAHFCSMCGP KFCSMKITQE VREYAANQRI 
EAVDVDVARG LAEQAERFKQ EGSQLYKKV