Gene PSPTO_4963 details

Gene Information

• Locus tag: PSPTO_4963
• Symbol: parE
• ID: 1186648
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 5627568
• End bp: 5629472
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637396284
• Product: DNA topoisomerase IV, B subunit
• Protein accession: NP_794696
• Protein GI: 28872077
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
• TIGRFAM ID: [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCAATC CCAGCGCTAG CTCTTATAAC GCAGACGCCA TCGAAGTCCT CTCGGGCCTC 
GATCCGGTTC GCAAACGTCC GGGCATGTAC ACCGACACCT CGCGCCCCAA TCACCTGGCG 
CAGGAAGTCA TCGACAATAG CGTCGACGAA GCCCTGGCCG GTCATGCGCG CTCGGTGCAG 
GTCATCCTGC ACGCCGACAA CTCTCTGGAA GTGTCCGACG ACGGTCGCGG CATGCCGGTG 
GACATCCACC CGGAAGAGGG CGTGTCCGGC GTCGAGCTGA TCCTTACCAA GCTGCACGCG 
GGTGGCAAAT TCTCCAACAA GAATTACCAG TTTTCCGGCG GCCTGCACGG CGTGGGGATT 
TCCGTGGTCA ACGCGCTTTC CACTCAGGTC CGGGTGCGGG TCAAGCGTGA TGGCAACGAA 
TACGAAATGA CCTTCGCCGA CGGCTACAAG GCCACCGAGC TGGCTGTCAT TGGCACAGTC 
GGCAAGCGCA ACACCGGCAC CAGCGTTTAT TTCGCGCCTG ATCCGAAGTA TTTCGATACG 
CCCAAGTTTT CGGTCAGCCG CCTCAAGCAC GTGCTCAAGG CCAAAGCCGT GCTGTGCCCT 
GGCCTGCTGG TCAGTTTTGA AGACAAGTCC AGCGGCGAGA AAATCGAGTG GCATTATGAG 
GACGGCCTGC GCTCTTACTT GCAGGATTCG GTCACCGAGT TCCTGCGCCT GCCCGACGAG 
CCGTTCTGCG GCAGTTTTGC CGGTAACAAG GAGGCGGTCG ATTGGGCGCT GCTGTGGTTG 
CCCGAGGGGG GCGACAGTGT TCAGGAAAGC TACGTCAACC TGATCCCGAC CGCGCAGGGC 
GGCACCCACG TCAATGGCTT GCGCCAGGGC TTGCTGGATG CCATGCGCGA GTTCTGCGAG 
TTCCGCAACC TGCTGCCGCG CGGCGTAAAG CTTGCGCCGG AAGACGTCTG GGAGCGCATC 
GCTTTTGTGC TGTCGATGAA GATGCAGGAG CCGCAGTTCT CCGGCCAGAC CAAAGAGCGT 
TTGTCGTCCC GTGAAGCGGC GGCGTTTGTC TCGGGTGTGG TCAAGGATGC GTTCAGCCTG 
TGGCTCAACA CCCATTCCGA GCTTGGCCTG CAGCTGGCCG ATCTGGCGAT CAACAACGCC 
GGGCGTCGTC TCAAGGCCAG CAAGAAAGTC GAACGCAAGC GCATCACCCA AGGCCCTGCG 
TTGCCGGGCA AACTGGCTGA TTGTGCCGGG CAGGATCCAG CGCGCTCCGA GCTGTTTCTG 
GTCGAAGGTG ACTCCGCCGG TGGTTCGGCC AAGCAGGCAC GCGACAAGGA GTTTCAGGCC 
ATCCTGCCGT TGCGCGGCAA AATTCTGAAC ACCTGGGAAG TGGATGGCGG CGAAGTGCTC 
GCCAGCCAGG AAGTGCACAA CATCGCTGTC GCCATCGGTG TTGATCCAGG CGCAGCGGAC 
ATCAGCCAGT TGCGCTACGG CAAGATCTGT ATCCTCGCCG ACGCCGACTC GGACGGTCTG 
CACATTGCCA CGCTGCTGTG TGCGTTGTTC GTCCAGCACT TCCGCCCGTT GGTCGATGCC 
GGCCATGTGT ATGTCGCCAT GCCGCCGCTG TACCGGATCG ACCTGGGCAA GGAAATCTAC 
TACGCGCTGG ATGAAGCCGA ACGTGATGGG ATTCTTGACC GTCTGGTAGC CGAAAAGAAA 
CGCGGCAAGC CGCAGGTCAC CCGATTCAAA GGGCTGGGTG AAATGAACCC GCCGCAGTTG 
CGCGAAACCA CCATGGACCC GAACACGCGG CGTCTGGTCC AGCTCACGCT GGATGACTAT 
GCCGCGACGT CGGAAATGAT GGACATGCTG CTGGCCAAGA AGCGCGCCGG TGATCGCAAG 
TCCTGGCTTG AGTCGAAGGG CAACCTTGCT GAGGTCCTGA CTTGA 

 

Protein sequence

MANPSASSYN ADAIEVLSGL DPVRKRPGMY TDTSRPNHLA QEVIDNSVDE ALAGHARSVQ 
VILHADNSLE VSDDGRGMPV DIHPEEGVSG VELILTKLHA GGKFSNKNYQ FSGGLHGVGI 
SVVNALSTQV RVRVKRDGNE YEMTFADGYK ATELAVIGTV GKRNTGTSVY FAPDPKYFDT 
PKFSVSRLKH VLKAKAVLCP GLLVSFEDKS SGEKIEWHYE DGLRSYLQDS VTEFLRLPDE 
PFCGSFAGNK EAVDWALLWL PEGGDSVQES YVNLIPTAQG GTHVNGLRQG LLDAMREFCE 
FRNLLPRGVK LAPEDVWERI AFVLSMKMQE PQFSGQTKER LSSREAAAFV SGVVKDAFSL 
WLNTHSELGL QLADLAINNA GRRLKASKKV ERKRITQGPA LPGKLADCAG QDPARSELFL 
VEGDSAGGSA KQARDKEFQA ILPLRGKILN TWEVDGGEVL ASQEVHNIAV AIGVDPGAAD 
ISQLRYGKIC ILADADSDGL HIATLLCALF VQHFRPLVDA GHVYVAMPPL YRIDLGKEIY 
YALDEAERDG ILDRLVAEKK RGKPQVTRFK GLGEMNPPQL RETTMDPNTR RLVQLTLDDY 
AATSEMMDML LAKKRAGDRK SWLESKGNLA EVLT