Gene PSPTO_4943 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4943 
SymbolmiaA 
ID1186628 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp5602132 
End bp5603103 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content58% 
IMG OID637396264 
ProducttRNA delta(2)-isopentenylpyrophosphate transferase 
Protein accessionNP_794676 
Protein GI28872057 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0324] tRNA delta(2)-isopentenylpyrophosphate transferase 
TIGRFAM ID[TIGR00174] tRNA isopentenyltransferase (miaA) 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGCTT TACCTCCGGC CATCTTTCTC ATGGGGCCTA CCGCGGCAGG CAAGACCGAC 
CTTGCGATTG AACTGAGCAA AGTGCTGCCC TGCGAGCTGA TCAGCGTCGA TTCGGCGCTG 
GTCTATCGCG GCATGGACAT CGGCACCGCC AAGCCGTCGA AAGCGCAACT GGCTGAATTC 
CCGCACCGCC TGATCGACAT TCTCGACCCC GCGCAAAGCT ACTCCGCCGC TGACTTTCGC 
AGTGACGCAC TGGCCGCCAT GGCGCAAATC ACCGCACGCG GAAATATTCC TTTGCTGGTC 
GGCGGCACTA TGTTGTATTT CAAGGCTCTA TTGGACGGGC TGGCGGATAT GCCAGCGGCC 
AATGCAGCGG TTCGGGCGCA GCTTGAAGCT GATGCGCAGG CCTTTGGCTG GCAGTCGTTG 
CATGATCAAC TGGCGGTGGT CGACCCCGTT TCGGCGGCAC GGATTCACCC CAATGATCCA 
CAGCGACTGA TCAGGGCTCT GGAGGTTTAT CGGGTGAGCG GAATGAGCAT GACCGCACAC 
CGCGAGCAAC AAACTGCGCA AAGTACCGAA GCGGCCGCAT CAGGGTGTCA GCAATTGCCC 
TATACTGTCG CAAATCTTGC TATCGCTCCG GCTGATCGCA AGGTGTTGCA TCAACGCATC 
GCGTTACGTT TCGAGCAAAT GCTGGATCAG GGGTTTCTGG ACGAAGTACT GGCATTACGC 
TCAAGAGGCG ACCTGCACGC CGGGTTGCCC TCGATAAGAG CAGTCGGTTA TCGCCAGGTC 
TGGGATCACC TGGATGGAAA GCTGACGCGG GAAGAAATGC AGGAGCGCGG CATCATTGCA 
ACGCGCCAGT TGGCCAAAAG GCAGTTCACC TGGCTACGTA GCTGGGACGA TCTGCACTGG 
TTGGACAGCC TGGCCAGCGA CAATCTGTCG CGCGCCTTGA AATACCTGGG ATCGGTCTCC 
ATATTGAGCT GA
 
Protein sequence
MNALPPAIFL MGPTAAGKTD LAIELSKVLP CELISVDSAL VYRGMDIGTA KPSKAQLAEF 
PHRLIDILDP AQSYSAADFR SDALAAMAQI TARGNIPLLV GGTMLYFKAL LDGLADMPAA 
NAAVRAQLEA DAQAFGWQSL HDQLAVVDPV SAARIHPNDP QRLIRALEVY RVSGMSMTAH 
REQQTAQSTE AAASGCQQLP YTVANLAIAP ADRKVLHQRI ALRFEQMLDQ GFLDEVLALR 
SRGDLHAGLP SIRAVGYRQV WDHLDGKLTR EEMQERGIIA TRQLAKRQFT WLRSWDDLHW 
LDSLASDNLS RALKYLGSVS ILS