Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4939 |
Symbol | hflC |
ID | 1186624 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5598312 |
End bp | 5599181 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637396260 |
Product | hflC protein |
Protein accession | NP_794672 |
Protein GI | 28872053 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
TIGRFAM ID | [TIGR01932] HflC protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.744013 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCAATA AATCGCTGAT CACCCTTATT GTTGGTGTGG TACTGGCAGT CGTTGCCTGG AACAGCTTCT ACATAGTGTC CCAGACCGAG CGTGCGGTTT TGCTGCAGTT CGGCAAGGTG GTTCAGACTG ACGTCAAGCC GGGTCTGCAC GTGAAGGTCC CTTACGTGAA CCAGGTGCGC AAGTTCGACG GACGTCTGCT GACGCTCGAT GCGCCTACCC AGCGTTTTCT GACGCTGGAA AAGAAAGCCG TCATGGTTGA TGCCTATGCC AAATGGCGCG TGAAGGATGC GGAGCGTTTC TATACTGCGA CTTCCGGCCT CAAGCAGATT GCCGACGAGC GCCTGTCGCG TCGTCTGGAA TCCGGCCTGC GAGACCAGTT CGGCAAGCGC ACCCTGCATG AAGTCGTGTC GGGTGAGCGG GATGCACTGA TGGCTGACAT CACGGGTTCG CTGAACCGCA TGGCTGAGAA AGAGCTGGGT ATCGAAGTAC TCGATGTCCG GGTCAAGGCC ATCGACCTGC CCAAGGAAGT GAATCGCAGC GTTTTCGAGC GGATGAGTAC CGAGCGTGAA CGTGAAGCGC GCGAGCACCG TGCCAAGGGT AACGAGCTGG GTGAAGGCAT CCGTGCCGAC GCCGATCGTC AACGCCGTGT ATTGCTGGCA GAAGCCTATC GCGAGTCTGA AGAGGCGCGT GGTGATGGTG ATGCCCAGGC TGCGGCGATC TATTCCAAGG CCTACGGTCA GGATCAGGAG TTCTACGCGT TTTATCGTAG CCTGCGTGCC TACCGCGAAA GCTTTGCGAA CAAGAGTGAC GTGATGGTGC TTGATCCAGA CAGCGAATTC TTTCGCTACA TGGAAAAAGC CAAGCCGTAA
|
Protein sequence | MSNKSLITLI VGVVLAVVAW NSFYIVSQTE RAVLLQFGKV VQTDVKPGLH VKVPYVNQVR KFDGRLLTLD APTQRFLTLE KKAVMVDAYA KWRVKDAERF YTATSGLKQI ADERLSRRLE SGLRDQFGKR TLHEVVSGER DALMADITGS LNRMAEKELG IEVLDVRVKA IDLPKEVNRS VFERMSTERE REAREHRAKG NELGEGIRAD ADRQRRVLLA EAYRESEEAR GDGDAQAAAI YSKAYGQDQE FYAFYRSLRA YRESFANKSD VMVLDPDSEF FRYMEKAKP
|
| |