| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4935 |
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| Symbol | vacB |
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| ID | 1186618 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5590105 |
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| End bp | 5592738 |
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| Gene Length | 2634 bp |
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| Protein Length | 877 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637396254 |
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| Product | ribonuclease R |
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| Protein accession | NP_794668 |
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| Protein GI | 28872049 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGATT GGCAGTCCCT CGATCCCGAG GCCGCTCGTG AAGCGGAAAA ATACGAAAAC
CCTATTCCCA GTCGCGAGCT GATCTTGCAG CATCTTGCCG AGCGCGGTTC GCCGGCAAGT
CGCGAGCAAC TGGTCGAAGA ATTCGGCCTG ACCACTGAAG ATCAATTCGA GGCCCTGCGC
CGTCGCCTTC GTGCGATGGA ACGCGACGCC CAATTGATCT ACACCCGTCG CGGCACTTAC
GCACCGGTGG ACAAACTGGA CCTGATCCTC GGCCGTATCT CCGGCCATCG TGACGGTTTT
GGTTTTCTGG TCCCCGATGA CGGCTCCGAC GACCTGTTCA TGAGCCCTGC ACAAATGCGT
CTGGTGTTCG ACGGTGATCG GGCCTTGGCG CGTGTTTCCG GTCTTGACCG CCGTGGTCGT
CGCGAAGGCG TGATCGTCGA AGTGATCTCG CGGGCTCATG AGACCATCGT GGGTCGCTAT
TTCGAAGAAA GCGGCATTGG TTTTGTTGTG CCCGACAACC CGAAAATCCA GCAGGAAGTG
CTGGTCACGC CGGGTCGCAA CAGCAGCGCC AAGATTGGCC AGTTCGTCGA GGTGAAAATC
ACTCACTGGC CAACCCCGCG CTTCCAGCCA CAAGGTGATG TGGTCGAAGT GGTCGGCAAC
TACATGGCGC CGGGCATGGA GATCGATGTC GCACTGCGCA CTTACGATAT CCCGCACGTA
TGGCCAGAAG CCGTCCTCAA GGAAGCCGCC AAGCTCAAGC CGGAAGTTGA AGAGAAGGAC
AAGGAAAACC GCGTAGACCT GCGCCACCTG CCTTTCGTCA CTATCGACGG CGAAGACGCT
CGCGACTTCG ACGATGCGGT TTATTGCGAA GCCAAGCCGG GCAAGCTGCG CTTGTTCTCC
GGGGGCTGGA AGCTTTACGT GGCGATTGCC GACGTATCGA GCTACGTGAA GATCGGTTCC
GCGCTGGATG CAGAATCCCA GGTTCGTGGC AACTCGGTGT ACTTCCCCGA GCGCGTAGTG
CCGATGCTGC CTGAGCAGTT GTCCAACGGC CTGTGTTCGC TGAACCCGCA TGTCGATCGT
CTGGCCATGG TCTGCGAGAT GACCATCTCC AAGACCGGCG AGATGACCGA CTACGTCTTT
TACGAAGGCA TCATTCACTC CCATGCCCGT CTGACCTACA ACAAGGTCAG CACGATTCTG
GAGCAGCCGA AAACCGCCGA GGCTAAAAGC CTGCGCGGCG AATACGGCGA CGTGGTTCCG
CACCTCAAGC AGCTTTACGC GATGTACAAG GTGTTGCTGG GTGCGCGCCA TGTGCGTGGC
GCGATCGATT TCGAAACTCA GGAAACCCGG ATCATCTTCG GTTCCGAGCG CAAGATTGCC
GAAATCCGTC CGACCACCCG CAACGACGCT CACAAGCTGA TCGAAGAGTG CATGCTGGCT
GCCAACGTGG CCACTGCGCA GTTCTTGAAG AAGCACGAAA TTCCTGCGCT GTACCGCGTT
CACGATGGTC CGCCGCCGGA GCGTCTTGAA AAACCGCGCG CGTTTCTGGG TGAGCTGGGT
CTGAGCCTGC ACAAAGGCAA GGACGGTCCT ACGCCGAAGG ATTATCAGGC GCTGCTTGAA
ACCGTTCGCG ATCGACCTGA CTACCACCTG ATCCAGACCG TGATGCTGCG TTCGTTGAGC
CAGGCTGTCT ACAGCTCGGA CAACAACGGC CATTTCGGTC TGAATTACGA GGCGTACACG
CACTTCACGT CGCCGATCCG TCGTTATCCG GACCTGCTGA CGCACCGTGC GATCCGCAGC
GTTATCCGCT CCAAGCAGGA CACCCCGCAC GTCCGCCGTG CTGGCGCTGC CACGATTCCG
AAGGCGCGCA TCTACCCGTA CGACGACGCG CTGCTCGACC AGTTGGGCGA ACAATGCTCG
ATGAGCGAGC GCCGTGCCGA TGAAGCCACG CGTGATGTGG TCAACTGGCT CAAGTGCGAG
TACATGAAGG ATCGCGTGGG CGAGTCGTTC CCGGGCGTGA TCACGGCGGT GACCGGCTTT
GGTCTGTTCG TCGAGCTGAC CGACATCTAT GTCGAAGGTC TGGTCCACGT CACGGCTCTG
CCGGGTGATT ACTACCATTT CGATCCGCTG CATCACCGCC TTGCCGGCGA GCGTACCGGG
CGCAACTTCC GCCTGGGCGA TACTGTTGAA GTGCGGGTCA TGCGTGTCGA TCTGGATGAG
CGCAAGATCG ATTTCGAAAT TTCCGAGACG GCAGCGGCAG CAACCCCGGT CGGTCGCAAG
CGTCAGGGTC ACAACACTGC GCCGCCTGCT GCTGCAGCGC CGGCTGAAAA GGAAAAGGCA
CCTGCCAAGT CCGGTCGCCG TACAACGTCT GCCAAGGAGA GCAGTTCCGA AGCGTATCGC
CCAAGCGATG CGGCGGCGAA AAACGCAGAA GTGCGTAAAA GCCGCGAACT GAAAAAAGCG
CTTCTGGCTG ACGCGAAGGG TGGTAGCAAG GCGTCGTCGG GAAAGTCTGA CAGGTCGGGT
TCTGCTCCTT CGTCGAGCAA GCCGGCCAGT AAACACCGTA AAGGCCCGCC AAAAGCGGGC
TCGGCGCCAG CTGCAAAAAG CAGTGGCGCT CGTAAACCCA AGGCCAAGTC ATGA
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| Protein sequence | MADWQSLDPE AAREAEKYEN PIPSRELILQ HLAERGSPAS REQLVEEFGL TTEDQFEALR
RRLRAMERDA QLIYTRRGTY APVDKLDLIL GRISGHRDGF GFLVPDDGSD DLFMSPAQMR
LVFDGDRALA RVSGLDRRGR REGVIVEVIS RAHETIVGRY FEESGIGFVV PDNPKIQQEV
LVTPGRNSSA KIGQFVEVKI THWPTPRFQP QGDVVEVVGN YMAPGMEIDV ALRTYDIPHV
WPEAVLKEAA KLKPEVEEKD KENRVDLRHL PFVTIDGEDA RDFDDAVYCE AKPGKLRLFS
GGWKLYVAIA DVSSYVKIGS ALDAESQVRG NSVYFPERVV PMLPEQLSNG LCSLNPHVDR
LAMVCEMTIS KTGEMTDYVF YEGIIHSHAR LTYNKVSTIL EQPKTAEAKS LRGEYGDVVP
HLKQLYAMYK VLLGARHVRG AIDFETQETR IIFGSERKIA EIRPTTRNDA HKLIEECMLA
ANVATAQFLK KHEIPALYRV HDGPPPERLE KPRAFLGELG LSLHKGKDGP TPKDYQALLE
TVRDRPDYHL IQTVMLRSLS QAVYSSDNNG HFGLNYEAYT HFTSPIRRYP DLLTHRAIRS
VIRSKQDTPH VRRAGAATIP KARIYPYDDA LLDQLGEQCS MSERRADEAT RDVVNWLKCE
YMKDRVGESF PGVITAVTGF GLFVELTDIY VEGLVHVTAL PGDYYHFDPL HHRLAGERTG
RNFRLGDTVE VRVMRVDLDE RKIDFEISET AAAATPVGRK RQGHNTAPPA AAAPAEKEKA
PAKSGRRTTS AKESSSEAYR PSDAAAKNAE VRKSRELKKA LLADAKGGSK ASSGKSDRSG
SAPSSSKPAS KHRKGPPKAG SAPAAKSSGA RKPKAKS
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