| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4928 |
|---|
| Symbol | |
|---|
| ID | 1186611 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5583101 |
|---|
| End bp | 5585416 |
|---|
| Gene Length | 2316 bp |
|---|
| Protein Length | 771 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637396247 |
|---|
| Product | radical SAM domain protein |
|---|
| Protein accession | NP_794661 |
|---|
| Protein GI | 28872042 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1032] Fe-S oxidoreductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATCAG CCAAGCCGTT ATTTGACTAT CCCAAGTACT GGGCCGAATG TTTCGGGCCT
GCACCTTTCC TGCCCATGAG CCGGGAAGAA ATGGATCTGC TTGGCTGGGA TTCCTGCGAC
ATCATCATTG TCACTGGTGA TGCGTATGTG GATCACCCGT CTTTCGGCAT GGCGATCATC
GGCCGTCTGC TTGAATCCCA GGGCTTTCGG GTCGGGATCA TCGCGCAGCC CAACTGGCAG
TCCAAAGACG ACTTCATGAA GCTCGGCGAG CCGAACCTGT TTTTCGGTGT CGCTGCCGGC
AACATGGACT CGATGATCAA CCGCTACACC GCCGACAAGA AAATCCGTTC CGACGACGCC
TACACGCCCG GCGGCATGGC CGGCAAGCGT CCGGACCGCG CGAGTCTGGT CTACAGCCAG
CGCTGCAAGG AAGCCTACAA GCACGTGCCT ATCGTGCTCG GCGGCATCGA AGCCTCGCTG
CGCCGCATTG CGCACTATGA CTACTGGCAG GACAAGGTTC GCAACTCGAT CCTGATCGAC
GCCTGCGCCG ACATCCTGCT CTACGGCAAC GCCGAGCGGG CTATTGTCGA AGTCGCCCAG
CGTCTGTCGT ATGGCCACAA GATCGAAGAC ATCACCGATG TGCGTGGCAC CGCGTTCATC
CGTCGCGACA CGCCGCAAGG CTGGTACGAA GTCGACTCGA CACGTATCGA CCGTCCGGGC
AAGGTCGACA AGATCATCAA CCCGTACGTC AACACCCAGG ACACCCAGGC CTGCGCCATC
GAGCAGGAAA AAGGCAACGT CGAGGACCCC AACGAAGCCA AGGTTGTGCA GATTCTTGCC
AGCCCGCGCA TGACCCGTGA CAAAACGGTC ATCCGTCTGC CATCGGTGGA AAAGGTTCGC
AACGACGCCG TGCTGTATGC CCACGCCAAC CGCGTGTTGC ACCTGGAAAC CAACCCGGGC
AACGCCCGTG CGCTGGTGCA GAAGCACGGT GAAGTCGACG TCTGGTTCAA CCCGCCGCCG
ATTCCGATGA CCACCGACGA AATGGACTAC GTGTTCGGCA TGCCTTACGC GCGCGTTCCA
CACCCTGCGT ACGGCAAGGA AAAGATTCCC GCCTACGACA TGATCCGTTT CTCGGTGAAC
ATCATGCGTG GCTGCTTCGG CGGCTGCACG TTCTGCTCGA TCACCGAGCA CGAAGGCCGG
ATCATCCAGA ACCGTTCGGA AGAGTCGATC ATTCGCGAAA TCGAAGAGAT CCGCGACAAG
GTGCCAGGCT TTACCGGCGT CATTTCCGAC TTGGGCGGGC CGACTGCGAA CATGTATCGC
ATCGCCTGCA AAAGCCCGGA AATCGAGTCG GCCTGCCGCA AGCCGTCCTG CGTATTCCCT
GGCATCTGCC CGAACCTGAA CACCGACCAC TCGTCGCTGA TTCAGCTGTA TCGCAGTGCC
CGCGCCTTGC CTGGCGTGAA GAAAATCCTC ATCGCTTCCG GCCTGCGCTA TGACCTGGCG
GTCGAGTCGC CGGAATACGT CAAGGAGCTG GTCACCCACC ACGTCGGTGG TTACCTGAAG
ATCGCCCCGG AACACACCGA GGAAGGTCCG CTCAATCAGA TGATGAAGCC GGGCATTGGC
AGCTATGACA AGTTCAAGCG CATGTTTGAA AAGTACACCA AGGAAGCAGG CAAGGAGCAG
TACCTGATTC CTTACTTCAT CGCCGCCCAT CCAGGCACGA CCGATGAAGA CATGATGAAC
CTCGCGCTGT GGCTCAAGGG CAACGGTTTC CGCGCGGATC AGGTGCAGGC GTTCTACCCC
TCGCCAATGG CGACTGCCAC GGCCATGTAC CACTCGGGCA AGAACCCCCT GCGCAAGGTC
ACTTACAAGA GTGACGCCGT CACGATTGTG AAGAGCGAAG AGCAGCGTCG CCTGCACAAG
GCCTTCCTGC GTTATCACGA CCCCAAGGGC TGGCCGATGC TGCGTGCAGC ACTGGAGCGC
ATGGGCCGTG CCGACCTGAT CGGGCCGGGC AAGGACCAGT TGATCCCGCT GCATCAGCCA
GCGACCGACA CCTACCAGAG TGCCCGTCGC AAGAACTCGA CACCGGCTGG CAGCCACAAG
GTGGGCAAGG ACCCGAAAAC CACGCTGATC CAGACCCAGC ACACCGGCCT GCCGCCGCGT
GGCAGCGATG GCAGCAAGCC GTGGGACAAA CGCGAAGAAG CCAAGGCTGC CGCAATGGCG
CGCAACAAGC AGGCCGCCAA AGAGCGCATG GACGCAGCCA AGGGCGGCAA GGGTAAAGGC
GGCAAGCCAG CCCGCAAGCC TGTCGTGCCT CGTTGA
|
|---|
| Protein sequence | MQSAKPLFDY PKYWAECFGP APFLPMSREE MDLLGWDSCD IIIVTGDAYV DHPSFGMAII
GRLLESQGFR VGIIAQPNWQ SKDDFMKLGE PNLFFGVAAG NMDSMINRYT ADKKIRSDDA
YTPGGMAGKR PDRASLVYSQ RCKEAYKHVP IVLGGIEASL RRIAHYDYWQ DKVRNSILID
ACADILLYGN AERAIVEVAQ RLSYGHKIED ITDVRGTAFI RRDTPQGWYE VDSTRIDRPG
KVDKIINPYV NTQDTQACAI EQEKGNVEDP NEAKVVQILA SPRMTRDKTV IRLPSVEKVR
NDAVLYAHAN RVLHLETNPG NARALVQKHG EVDVWFNPPP IPMTTDEMDY VFGMPYARVP
HPAYGKEKIP AYDMIRFSVN IMRGCFGGCT FCSITEHEGR IIQNRSEESI IREIEEIRDK
VPGFTGVISD LGGPTANMYR IACKSPEIES ACRKPSCVFP GICPNLNTDH SSLIQLYRSA
RALPGVKKIL IASGLRYDLA VESPEYVKEL VTHHVGGYLK IAPEHTEEGP LNQMMKPGIG
SYDKFKRMFE KYTKEAGKEQ YLIPYFIAAH PGTTDEDMMN LALWLKGNGF RADQVQAFYP
SPMATATAMY HSGKNPLRKV TYKSDAVTIV KSEEQRRLHK AFLRYHDPKG WPMLRAALER
MGRADLIGPG KDQLIPLHQP ATDTYQSARR KNSTPAGSHK VGKDPKTTLI QTQHTGLPPR
GSDGSKPWDK REEAKAAAMA RNKQAAKERM DAAKGGKGKG GKPARKPVVP R
|
|---|
| |