| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4926 |
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| Symbol | |
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| ID | 1186609 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5576759 |
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| End bp | 5580037 |
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| Gene Length | 3279 bp |
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| Protein Length | 1092 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637396245 |
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| Product | transglutaminase-like superfamily domain protein |
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| Protein accession | NP_794659 |
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| Protein GI | 28872040 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases
[COG4196] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCGATTC ATATTGCCTT GCACCATGTC ACGCATTACC GCTACGAACG CGCGGTCGAA
CTGGGTCCTC AGATCGTTCG TCTGCGCCCG GCCGCCCACA GCCGCACCCG CGTGCTGTCG
TATTCACTGA AAGTCCTGCC TGAAAACCAC TTCATCAACT GGCAGCAGGA CCCTCAGGGC
AATTACCTGG CGCGTCTGGT CTTTCCGGAA AAGACCAACG AATTCCGTGT CGAGGTTGAT
CTGGTCGCCG AGATGGCGGT GTTCAACCCG TTCGACTTCT TTCTGGAACC CTACGCCGAG
AACATCCCCT TCACGTACGC CAGCGAAGAG CAGCGCGAGC TTGCGCCGTA CCTGGAAAAG
CTGCCGCTGA CGCCAAGATT CAAGGCCTAT CTGGACAGCA TCAGCCGTGT GCCGATTCCG
GCCATCGACT TTCTGGTTGG TCTCAACCAA CGCCTGAGCC AGGATGTCGA TTACCTGATC
CGCATGGAGC CGGGTGTACA GACCCCGGAA TTCACCCTGG AAAACGCCTC GGGCTCCTGC
CGCGATTCAG CCTGGCTGCT GGTGCAACTG CTGCGTCATC TGGGCATGGC TGCACGGTTT
GTGTCGGGCT ACCTGATTCA GCTCAAGGCG GATGTCGAGG CGCTGGACGG GCCGTCCGGT
ACCGACGTCG ATTTCACCGA CCTGCACGCC TGGTGCGAGG TGTATCTGCC GGGCGCGGGC
TGGGTCGGGC TGGACGCCAC GTCCGGGCTG TTCGCAGGCG AGGGGCACAT TCCGCTGGCG
TGCAGCCCGG AGCCGTCCTC CGCCGCGCCG ATCAGCGGGC TGGTCGAGCC GTGCGAGACC
GAATTCAGCC ACGAAATGTC GGTCGAGCGC ATCTGGGAGG CGCCACGCGT CACCAAGCCC
TACACCGAAG AACAATGGCA GGACATCCAG GCCCTCGGCC GGCAGATCGA CGCTGATCTG
CTGCGCGACG ACGTGCGCCT GACCATGGGC GGCGAGCCGA CGTTCGTCTC CATCGATGAT
CGCGACGGCG CCGAGTGGAA CACCGCCGCA CTGGGCCCTC GCAAGCGCGA GCTGTCTGCC
GAGCTGTTTC AGCGTATGCG CGCGCATTAC GCGCCGCTGG GCATCGTGCA TTTTGGTCAG
GGCAAGTGGT ATCCGGGCGA GCAACTGCCG CGCTGGTCGC TGAACTGCTT CTGGCGCAAG
GACGGCAAGC CGGTCTGGCA CAACAACGCG CTGATCGCGG ATGAAACGCA GGACTATGGC
GCGACCGGCG AGCTGGCCGG GCGTTTTCTC GCCAGCGTAG CCGAGCGCCT CAAGCTGCCG
GAGCGTTTCG TCTTTCCAGC CTACGAAGAC AACTTTTACT ACCTGTGGCG CGAAGGTGCG
CTGCCGGTGA ACGTGACCGC CGAAGATTCA CGGCTCGGCG ACGAACTGGA GCGGGCGCGC
CTGCGCAAGG TCTTCGCGCA AGGTCTGGAC AAGATGATTG GTCAGGTCCT GCCGCTGGCC
CGTAGCGCAA AAGGTGAAAA TTGGCAGAGC GGCCGCTGGT ATCTGCGCGA TGAGCACTGC
CGTCTGGTGC CTGGCGATTC TGCGCTGGGC TACCGATTGC CACTGGCGTC GCAGCCTTGG
GTCAAGGCGG CGGAGTACCC GTTCATTCAT CCGACTGACC ATAACCAGGA CTTCCCCGAG
CTGGCCGACA GCGACTCGCT GACCTCGCAG CTCAAGGCCG AGAATGCCGA CGCCGAGCGC
GAGCCCAAGC TGGATGAGTC CGCCGACTGG CTGACCCGCA CCGCGCTGTG TGCCGAGGCG
CGTGATGGGC GTCTGTACCT GTTCATGCCG CCGCTGCAAA AGCTTGAGGA ATACCTTGAG
CTGGTAGCCG TGATCGAAGC GACCGCCGAA GAGCTGCAAT GCCCGATCCT GCTGGAAGGC
TACGAGCCGC CGAGCGATCC ACGCCTGTGC AACTTCCGCA TCACGCCGGA TCCTGGCGTC
ATTGAAGTCA ACGTGCAGCC GTCCGCCAGC TGGGACGAAC TGGTCGAGCG CACCGAGTTT
CTTTACGAAC AGGCCCGCCA AACGCGCCTG ACTACCGAGA AATTCATGAT CGACGGCCGT
CACACCGGCA CCGGTGGCGG CAACCACTTC GTGCTCGGCG GGGCGACGCC TGCGGACTCA
CCGTTTCTGC GCCGCCCGGA CCTGCTGCGC AGCCTGCTCA GCTACTGGCA CAACCATCCC
TCGCTGTCTT ACCTGTTTTC CGGCCTGTTC ATCGGCCCGA CCTCTCAGGC ACCGCGCGTC
GATGAGGCGC GCAACGACTC GCTCTACGAG ATGGAAATCG CCTTCGCGCA AATGCCTTCG
CCCGGCGAAG AAGTCGCGCC GTGGGTCATC GACCGTCTGC TGCGCAACCT GTTGATCGAC
GTCACCGGCA ACACCCATCG AGCCGAATTC TGCATCGACA AACTGTATTC GCCGGATGGC
GCGACCGGGC GTCTGGGCTT GCTGGAGCTG CGCGCCTTCG AGATGCCGCC CCACGCACGC
ATGAGCCTTG CCCAGCAATT GCTGCTGCGG GCGCTGGTCG CACGTTTCTG GCGTGAACCC
TACGCACCGG CCAAACTGGC GCGTTGGGGC ACACAGTTGC ACGACCGCTT CATGCTCCCG
CACTTCATCG AGCAGGATTT CGCCGACGTG GTCGCCGACC TCAACTCGGC GGGTTATCCG
GTGCAGGCCG ACTGGTTTGC CGCGCATCTG GAGTTCCGCT TCCCCAAAGT GGGCGACTAC
GCCGTCAATG GTATCGAACT GGAACTGCGT CAGGCGCTGG AGCCTTGGCA CGTGCTGGGT
GAAGAAGGCT CGGCCGGTGG CGCGGTGCGC TATGTCGATT CGTCGCTGGA ACGCCTGCAG
GTGCATCTCA CCGGTCTGTC GCCGCAGCGT TATTTGCTGA CCTGCAATGG CATCCCGGTG
CCGCTGCAAG CCACCGGTCG GGTCGGCGAG TTTGTCGCCG GCGTACGTTA TCGTGCCTGG
CAACCGGCCA ACTGCCTGCA ACCGACCATC GGTGTGCATG CACCGCTGGT ATTTGATCTG
CTCGACACCT GGATGCACCG CTCGCTGGGC GGCTGCGAGT ATCATGTCGC CCACCCGGGC
GGTCGTAACT ACGAAACCTT GCCGGTCAAC GCCAACGAAG CGGAAAGCCG TCGCCTGTCA
CGTTTCTTCC GCATCGGTCA CACGCCCGGC AAACTGACCG TCCCGTCGCT CAACATTAAT
GACGAGCTGC CGATGACGCT GGATATGCGT CTGCATTAA
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| Protein sequence | MSIHIALHHV THYRYERAVE LGPQIVRLRP AAHSRTRVLS YSLKVLPENH FINWQQDPQG
NYLARLVFPE KTNEFRVEVD LVAEMAVFNP FDFFLEPYAE NIPFTYASEE QRELAPYLEK
LPLTPRFKAY LDSISRVPIP AIDFLVGLNQ RLSQDVDYLI RMEPGVQTPE FTLENASGSC
RDSAWLLVQL LRHLGMAARF VSGYLIQLKA DVEALDGPSG TDVDFTDLHA WCEVYLPGAG
WVGLDATSGL FAGEGHIPLA CSPEPSSAAP ISGLVEPCET EFSHEMSVER IWEAPRVTKP
YTEEQWQDIQ ALGRQIDADL LRDDVRLTMG GEPTFVSIDD RDGAEWNTAA LGPRKRELSA
ELFQRMRAHY APLGIVHFGQ GKWYPGEQLP RWSLNCFWRK DGKPVWHNNA LIADETQDYG
ATGELAGRFL ASVAERLKLP ERFVFPAYED NFYYLWREGA LPVNVTAEDS RLGDELERAR
LRKVFAQGLD KMIGQVLPLA RSAKGENWQS GRWYLRDEHC RLVPGDSALG YRLPLASQPW
VKAAEYPFIH PTDHNQDFPE LADSDSLTSQ LKAENADAER EPKLDESADW LTRTALCAEA
RDGRLYLFMP PLQKLEEYLE LVAVIEATAE ELQCPILLEG YEPPSDPRLC NFRITPDPGV
IEVNVQPSAS WDELVERTEF LYEQARQTRL TTEKFMIDGR HTGTGGGNHF VLGGATPADS
PFLRRPDLLR SLLSYWHNHP SLSYLFSGLF IGPTSQAPRV DEARNDSLYE MEIAFAQMPS
PGEEVAPWVI DRLLRNLLID VTGNTHRAEF CIDKLYSPDG ATGRLGLLEL RAFEMPPHAR
MSLAQQLLLR ALVARFWREP YAPAKLARWG TQLHDRFMLP HFIEQDFADV VADLNSAGYP
VQADWFAAHL EFRFPKVGDY AVNGIELELR QALEPWHVLG EEGSAGGAVR YVDSSLERLQ
VHLTGLSPQR YLLTCNGIPV PLQATGRVGE FVAGVRYRAW QPANCLQPTI GVHAPLVFDL
LDTWMHRSLG GCEYHVAHPG GRNYETLPVN ANEAESRRLS RFFRIGHTPG KLTVPSLNIN
DELPMTLDMR LH
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