| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4921 |
|---|
| Symbol | pncB |
|---|
| ID | 1186604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 5570362 |
|---|
| End bp | 5571585 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637396240 |
|---|
| Product | nicotinate phosphoribosyltransferase |
|---|
| Protein accession | NP_794654 |
|---|
| Protein GI | 28872035 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1488] Nicotinic acid phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01514] nicotinate phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGA GCGCCTTTTC AAATCGCATC GTGCAAAGCC TGCTCGATAC CGATTTCTAC
AAATTGACCA TGATGCAGGC GGTGCTGCAC AACTACCCCA ACGTCGACGT TGAATGGGAG
TTCCGCTGCC GCAACGGTGA AGACCTGCGT CCCTACCTGG GCGAAATCCA GCACCAGATC
GAGCTGCTGT GCGAGCTGTC CCTGAGCCCT GAACATCTGG TCTTTCTGGA ACGCATCACC
TTCATGAAAC CGGATTTTCT GAGGTTTCTG GGCCTGTTCC GTTTCAATAC CCGCTACGTA
AAAACCAGCA TCGAGAACGA TGAACTGTGC ATTCGCCTGC ACGGCCCGTG GCTCCACGTC
ATCCTCTTTG AAGTGCCGTT GCTGGCGATC GTCAGCGAGG TGCGCAATCG GCATCGCTAC
CCGGACACCC TGCTCAGCCA GGCGCGGGAT CGCCTGTACG ACAAGTTCGA ATGGCTGACC
GTCAACGCCA CGCCAGATGA ACTGGCCGAG CTGAAAGTCG CAGACTTCGG CACGCGCAGG
CGGTTCTCCT ACCGTGTGCA GGAAGAAGTT CTCAACGTGC TCAAGCTGGA CTTTCCGGGG
CAACTGGTCG GCACCAGCAA CGTTCACCTG GCGCGCCAGC TTGACCTCAA ACCGCTCGGC
ACGATGGCCC ACGAATGGAT CATGGCTCAC CAGCAACTGG GGCCGCGCCT GATCGACAGT
CAGATCGCCG CGCTTGATTG CTGGGTTCGC GAGTACCGCG GTCTGTTGGG TATTGCGCTG
ACTGACTGCA TCACCACCGA TGCCTTCCTG AACGACTTCG ATCTGTACTT CGCCAAGCTG
TTCGACGGTT TACGCCATGA TTCGGGCGAC CCGGTGAAGT GGGCCGAAAA ATGCATCTCG
CACTACCAGA AACTGGGTAT CGACCCGATG AGCAAGACGC TGGTGTTCTC CGATGGGCTG
AACCTGCCCA AGGCACTCGA TATTTTTCGG GCGTTACGCG GACGCATCAA TGTCAGCTTC
GGCATCGGCA CCAACCTGAC CGCCGACATA CCCGGCATCG CCCCCATGAA CATGGTGTTG
AAGATGACCG CTTGCGCAGG TCAGGCGGTG GCAAAAATTT CCGATGAGTC CGGCAAGACG
CAATGCAAGG ACCCGAACTT TGTCGCCTAC CTGCGGCATG TGTTCAAGGT GCCTGATTTG
CCGAGCCCCG CAAAACCCGC TTGA
|
|---|
| Protein sequence | MSESAFSNRI VQSLLDTDFY KLTMMQAVLH NYPNVDVEWE FRCRNGEDLR PYLGEIQHQI
ELLCELSLSP EHLVFLERIT FMKPDFLRFL GLFRFNTRYV KTSIENDELC IRLHGPWLHV
ILFEVPLLAI VSEVRNRHRY PDTLLSQARD RLYDKFEWLT VNATPDELAE LKVADFGTRR
RFSYRVQEEV LNVLKLDFPG QLVGTSNVHL ARQLDLKPLG TMAHEWIMAH QQLGPRLIDS
QIAALDCWVR EYRGLLGIAL TDCITTDAFL NDFDLYFAKL FDGLRHDSGD PVKWAEKCIS
HYQKLGIDPM SKTLVFSDGL NLPKALDIFR ALRGRINVSF GIGTNLTADI PGIAPMNMVL
KMTACAGQAV AKISDESGKT QCKDPNFVAY LRHVFKVPDL PSPAKPA
|
|---|
| |