| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4917 |
|---|
| Symbol | braE |
|---|
| ID | 1186600 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5565329 |
|---|
| End bp | 5566642 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637396236 |
|---|
| Product | high-affinity branched-chain amino acid ABC transporter, permease protein BraE |
|---|
| Protein accession | NP_794650 |
|---|
| Protein GI | 28872031 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.875772 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGTTA CTGCTGCTGG TCCTGTCACC AAACCTGTTG AAATCAAAAA AAGCCTGATC
GATGCCGTCG TCGCCGGGCT GCTGGCGCTG ATCGTATTTG GCCCGATTGT CGGCATCGTG
CTCGACGGCT ACAGCTTCAA CCTGCAACCG ACCCGTGTCG CGTGGCTGGT GGCTGTGGTC
ATGGTCGGGC GCTTTCTGAT TAGTCTGTTC CTGCAGACGC CCAGGGGCAT ACGCATGTCC
CAGAGCTTTG AAAGCTCGGA TTCTGGCGTG CATGTGCTCA AGCCAGATCA CAAATCCAGC
CTGTACTGGA TCATTCCGCT GCTGATCGTG GTTGCCATCG TGTTCCCGAT CTTCGCCAAC
AAGTACATCC TGACCGTGGT CATTCTCGGG CTGATCTACG TACTGCTGGG GCTGGGCCTG
AACATCGTGG TCGGTCTGGC CGGTCTGCTC GATCTGGGCT ACGTCGCGTT CTACGCCATC
GGTGCTTATG GCCTGGCGCT CGGCTATCAG TATCTGGGCC TGGGTTTTTG GTCGGCGTTG
CCGCTGGCAG CGATCGCGGC GGCGCTTGCC GGGTGCATTC TCGGCTTTCC GGTGTTGCGC
ATGCATGGCG ATTACCTGGC CATCGTGACG CTGGGGTTCG GCGAAATCAT CCGTCTGGTG
CTGAACAACT GGCTATCGTT CACGGGCGGC CCGAATGGTG TGCCGGTGCC GTCGCCGACC
TTTTTCGGCC TGGAATTCGG ACGTCGCGCC AAAGACGGCG GTGTCCCCAT TCATGAATAT
TTCGGCTTCG ATTACAACCC GGACCTGAAA TTCATCTTCA TCTATACCGT GCTGTTTCTG
GTGGTGCTGG CAGTGCTGTT CATCAAGCAT CGCCTGACCC GCATGCCGAT CGGTCGTGCC
TGGGAAGCCT TGCGTGAAGA CGAGATTGCC TGCCGTTCGA TGGGCCTCAA TCACGTACTG
GTCAAGCTCT CGGCGTTCAC CATAGGTGCT TCGACAGCGG GGCTTGCGGG CGTGTTTTTC
GCCAGCTACC AAGGCTTCGT CAACCCGACG TCGTTCACCT TCTTCGAGTC GGCGCTGATT
CTGGCCATCG TCGTGCTGGG CGGTATGGGT TCGACCATCG GTGTGGTGAT TGCTGCGTTC
GTGCTCACCG TTGCGCCTGA ACTGCTGCGC AGCTTCTCTG AGTACCGCGT GTTGCTGTTC
GGCATTCTGA TGGTGCTGAT GATGATCTGG CGGCCGCGCG GCCTGATCCG CATCAGCCGC
ACCGGGGTGA AACCACGCAA GGGTGCGCTG GTGACAGAAG GAGGTGCGCG ATGA
|
|---|
| Protein sequence | MSVTAAGPVT KPVEIKKSLI DAVVAGLLAL IVFGPIVGIV LDGYSFNLQP TRVAWLVAVV
MVGRFLISLF LQTPRGIRMS QSFESSDSGV HVLKPDHKSS LYWIIPLLIV VAIVFPIFAN
KYILTVVILG LIYVLLGLGL NIVVGLAGLL DLGYVAFYAI GAYGLALGYQ YLGLGFWSAL
PLAAIAAALA GCILGFPVLR MHGDYLAIVT LGFGEIIRLV LNNWLSFTGG PNGVPVPSPT
FFGLEFGRRA KDGGVPIHEY FGFDYNPDLK FIFIYTVLFL VVLAVLFIKH RLTRMPIGRA
WEALREDEIA CRSMGLNHVL VKLSAFTIGA STAGLAGVFF ASYQGFVNPT SFTFFESALI
LAIVVLGGMG STIGVVIAAF VLTVAPELLR SFSEYRVLLF GILMVLMMIW RPRGLIRISR
TGVKPRKGAL VTEGGAR
|
|---|
| |