| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4913 |
|---|
| Symbol | |
|---|
| ID | 1186596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 5561015 |
|---|
| End bp | 5562229 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637396232 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_794646 |
|---|
| Protein GI | 28872027 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2942] N-acyl-D-glucosamine 2-epimerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCGCA CTTCGACACT GCCGCGATGC CCGCCGATGC CTCATGTTTC CAGCTCTGCC
TCCAGCCCTG AACTGACCGC CGCACTCGCT GCCTTGCAGG CGCATTTCCT GCAAGTCGTC
GTGCCGCTCT GGCAGGGGCC GGGCTGGAAT GCGCAACTGG CGCTGCCTTA TGAAGCACTG
GATGCCGACG ATCAGCCGTT GCCGCCGCAG CGCTATCGGG CGATGGCCTG TGCGCGGCAG
TTGTTCCTGT TTTCCAGTCT GATCGGTAAC CCTGATGTGC CGAATGCGCA AACCCGGGCT
GGCGCGCTGT TCCGCTCTTT GCAACAGCAT TTCCATGATG CCGAGCACGG CGGCTGGTTC
TACAGCATTG ATCCCCAGGG CACGCCACTG GACCGCCGCA AGGACCTCTA CACTCACGCC
TTCATCATAT TTGCCTGCGC GCATTACTGG GCTAAAGTGC GCGACCCGCT CGCCGAGTCA
GTGCTCAACG CAGCGCTCAA CGTAGTAGCT GAACGCTTTG CCGACGATGA CGGGCTATAC
GAAGCGCAAC TCGATGAAGA CTGGTCGACG CTGGGCAGCG GCCCGTTGCA GAACCCCCTG
ATGCACCTGG CCGAAGCCTT TCTGGCAACA TTGTCAGTGC GCGCCGATCC GGCCACTCAG
GCGGCTATGG ATGCGCTGGT TATCCACATG CAACGCCGCT TTGTCGACAC GGCAACCGGC
GTGATGCTGG AAAAACCGCT GGGGGCTGTG GATAACTGGT ACGAACCAGG CCATCAGTTC
GAATGGTTTT TCCTGCTGCA ATCCTCGCCC GACCTGCACG GTCGCGAACT ACACCACTCC
ATGACCCGCG CATTCGCGTA CGCCCAGGCA CAAGGCGTTG ATGCACAGAG CGGCGCGGTC
ACGGCAATGC TGACGCTGGA CGGCACGGTG CGCGACGCTA CCCAGCGTAT CTGGGCTCAG
GCGGAGTATT TGCGGGCAAT GGCGCTACGG CCTGACAGTG AGGCCGGGCT ACTGAAGCAG
TTGCAGGCTT TTGAGCGGCG CTTTCTGCAT GCCAAAGGCT GGAACGAGTG CGTGGAGCCC
GACGGTACGG TCAGTCGCAG CGACATGCCT TCGACCACGC CTTACCATCT GGCAACGTGT
TACATCGGTC TGGCTGATTT TGCCGAGAAC CGCTTCGTCA CCGCCTTCCC GCCGCCGGTG
CCAGGAGAGG GCTGA
|
|---|
| Protein sequence | MLRTSTLPRC PPMPHVSSSA SSPELTAALA ALQAHFLQVV VPLWQGPGWN AQLALPYEAL
DADDQPLPPQ RYRAMACARQ LFLFSSLIGN PDVPNAQTRA GALFRSLQQH FHDAEHGGWF
YSIDPQGTPL DRRKDLYTHA FIIFACAHYW AKVRDPLAES VLNAALNVVA ERFADDDGLY
EAQLDEDWST LGSGPLQNPL MHLAEAFLAT LSVRADPATQ AAMDALVIHM QRRFVDTATG
VMLEKPLGAV DNWYEPGHQF EWFFLLQSSP DLHGRELHHS MTRAFAYAQA QGVDAQSGAV
TAMLTLDGTV RDATQRIWAQ AEYLRAMALR PDSEAGLLKQ LQAFERRFLH AKGWNECVEP
DGTVSRSDMP STTPYHLATC YIGLADFAEN RFVTAFPPPV PGEG
|
|---|
| |