| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4887 |
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| Symbol | |
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| ID | 1186570 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5538224 |
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| End bp | 5539303 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637396207 |
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| Product | branched-chain amino acid ABC transporter, permease protein |
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| Protein accession | NP_794621 |
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| Protein GI | 28872002 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR03408] urea ABC transporter, permease protein UrtC |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.599919 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAGC CATTGATGGT AACCGCCGCA CAGAAGGTTG GCCCAAAGGG CACGCTGGCT
TTGGGCATTA TGGTACTGGC CGTGCTGTTG GCACTGCCGC TGCTGTCGCT TCTGCCGGCC
GATAACAGTT TTCAGGTATC GGCCTACACC CTGACGCTGG TGGGCAAGAT TCTCTGCTAC
GCCATCGTCG CCCTCGCACT GGACCTGGTC TGGGGCTACG CCGGGTTGTT ATCGCTGGGC
CACGGCCTGT TTTTCGCGCT GGGCGGCTAT GCGATGGGGA TGTACCTGAT GCGCCAGGCC
GCGGGTGACG GCCTGCCTGC ATTCATGACC TTCCTGTCGT GGACCGAACT GCCGTGGTAC
TGGGCGGGCA CCGATAACTT TCTCTGGGCC ATGTGCCTGG TGGTCTTGGC GCCGGGGTTG
CTGGCGCTGG TGTTCGGCTT CTTTGCCTTC CGCTCACGTA TCAAGGGCGT GTACTTCTCG
ATCATGACCC AGGCGCTGAC CTTTGCCGGC ATGTTGCTGT TCTTTCGCAA CGAAACCGGC
TTTGGCGGCA ACAACGGCTT CACCAATTTT CGCAGCATTC TGGGCTTCAG CATCAGCTCG
CAAGGCACCC GAGCCACGTT GTTTCTGGCT ACGGTGGTGC TGCTGGTCGC CAGCCTGTAC
ATCGGCTGGA AACTGGCACA GAGCAAGTTC GGTCGGGTGC TGACCGCGCT GCGTGACGCG
GAAAACCGCC TGATGTTCTG CGGTTACGAT CCGCGCGGCT TCAAGCTGTT CGTCTGGGTA
TTGAGCGCGG TGCTGTGCGG TCTGGCCGGA GCCCTGTATG TGCCGCAGGT CGGCATCATC
AACCCCAGCG AAATGTCGCC GACCAACTCC ATCGAAGCCG CTGTGTGGGT GGCGCTGGGC
GGGCGCGGCA CGTTGATCGG CCCGCTGCTG GGTGCCGGTC TGGTGAACGG CATGAAAAGC
TGGTTCACCG TGGCTTTCCC GGAATACTGG CTGTTCTTTC TCGGCGCGCT GTTCATCATT
GTCACGCTGT ACCTGCCCAA GGGCGTGATC GGCTTGCTGA AGAAAAGGAG CGAGCAATGA
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| Protein sequence | MSQPLMVTAA QKVGPKGTLA LGIMVLAVLL ALPLLSLLPA DNSFQVSAYT LTLVGKILCY
AIVALALDLV WGYAGLLSLG HGLFFALGGY AMGMYLMRQA AGDGLPAFMT FLSWTELPWY
WAGTDNFLWA MCLVVLAPGL LALVFGFFAF RSRIKGVYFS IMTQALTFAG MLLFFRNETG
FGGNNGFTNF RSILGFSISS QGTRATLFLA TVVLLVASLY IGWKLAQSKF GRVLTALRDA
ENRLMFCGYD PRGFKLFVWV LSAVLCGLAG ALYVPQVGII NPSEMSPTNS IEAAVWVALG
GRGTLIGPLL GAGLVNGMKS WFTVAFPEYW LFFLGALFII VTLYLPKGVI GLLKKRSEQ
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