| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4868 |
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| Symbol | |
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| ID | 1186551 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5514202 |
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| End bp | 5516991 |
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| Gene Length | 2790 bp |
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| Protein Length | 929 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637396188 |
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| Product | sensor histidine kinase/response regulator RetS |
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| Protein accession | NP_794602 |
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| Protein GI | 28871983 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCGCTGGC TCAGGATTGC CATAGCCTCA ACGGTCGGAC TGCTGACCCT GCTGTTCATG
CTTTCGGCTC AGGCCGAGCA CGGGGCTGGC TGGTCGACGC TGCTCGACGA AAAGGCACGC
CTGTCGCTGG ATGAAATCCG TTCGGCGCGG TATCAGAATC AATTCAGCCC TATCGAACTT
GAACGCGTCG CCGCTGCGGA GCGCGACAGC GCGGTATGGC TGCATTACAG GTTACATCCC
AACCAGCATG AGCAACTGGT GCGTATCTTT GCCCCAGACC TTGCCAGCGC CGACATGTAC
GTCATGGATG GCGATCAACA GATCGATCAT CTGCGCACCG GCAACGCCGT GCCTACAGAA
GATCAGCGCC TGCCCTCCAA TGATTTCCTG CTGCCGATCC CGCAAAGCGC GGCCTCTCTG
GATATCTACC TGAGGCTTGT TTCCTCTCAG AAAATGCGCC CCAGCATTAC CCTCGAGCCC
GCCATACAGA GCGCTGCCGA CGAGACCGAA CCGTTTCTGT TCGGCCTGCT TTTTGGTGCG
CTGGCAATGC TGATCGTGCA GAACCTGACC CGCTACGCGC ACACGCGTTC GCGCAGCAAC
CTGTGGCTGG CGGCCTGCGA ATCAATGCTC GGGCTCAGCG CCCTGCTGCT GCTCAACCTG
CTTCGCCCTA TAGACCCGTG GCACATTGCC CAGACACCCA GCGCGCACGT TGCGTTGCTG
CTGGCCGCCG TCGCGGGCCT GATCTACACC TATTGTTTCT TCGTGCACCG CAACGCCCGC
ACACTGGATC GCCTGCTACT GGGCAACGCC GTGCTCATGG GCATTGGCGC ACTGCTGGTG
GTGTTCGACG CTACGCTGCC GATCAACGCG CTGACCTTCG TTCTGGTGTC CCTGACCACG
CTGAGTATCC TTGCTGTGTC GATGTGGCAC TGGCAAAAAG GCTATCGTTC GGCACGCCTG
TTCGTTCTGG GCATGATCAC CTTCAACATC GGCTATATGG TGGTGTTGCC GGGTCTGCTG
TGGCTGAGTC TGGTGCCGCC GCAATGGTTG ATACTCGCGC TGCTCTGCGT CTTCTGTATC
AGCGGCCTGC TGATGAGCCT GGCACTCAGC GAACGTTATC GCAGCATTAC CGAAGACCGT
TTCAGCGTCA GCCGGGATCA GGCAGCCAGT ACCGCTGAAA TCAACGCCAA AGCCGAATTT
CTGGCCAAGA TCAGCCACGA GATCCGCACC CCCATGAACG GCGTACTGGG CATGACCGAA
CTGCTGCTCG GCACGCCGTT GTCGGTCAAG CAGCGCGACT ATGTGCAGAC CATTCACAGT
GCCGGCAACG AACTGCTGAC GCTGATCAAC GAGATTCTGG ACATCACCAA GCTCGAATCA
GGGCAGATCG AACTGGACGA CGTACAGTTC GATATCAGTG CGCTGGTCGA AGACTGTCTG
AATATCTTCC GCGCCAAGGC CGAGCAGCAA CAGGTCGAAC TGATCAGCCA GATCCAGCCC
CAGGTGCCAC GCGTGATCAG CGGCGACCCG ACTCGCCTGC GCCAGACGCT GCTGAGCCTG
CTGGAAAATG CCCTGAAAAA GACCGACGAA GGCGAAATCC TGCTCGGCGT TGCGCTTGAG
TCTTCCAAGA GCGGACAGCC GCGCTTGCGC ATTTCGGTTC AGGACAGCGG CGAATCGCTC
TCCGACGAAG AGCGCGACGA GCTGCTTCAC GCCGAACTGC ACAGCAGAAA CTTTCTGGCC
AGCAGCAGGC TTGGCGGCCA TCTGGGGCTG GTCATCGCCC GCCAGTTGAT CATATTGATG
GACGGCGAAT TCGGTATCCA GAACAGTGGC ACGCCGGGTA ATACGCTGTG GCTGAACCTG
CCGCTGGACG CAAAGCTGCT TGAACAGCCG ACCATCGACC TGGACAGCCC GCTGAAGGAT
GCCCGCGTGC TGGTGGTCGA TGACAACGAC ACCTGCCGTA AAGTGCTCGT CCAGCAATGC
AGCGCCTGGG GCTTGAATGT CAGCGCCGTG GCATCGGGCA AGGAAGCGCT GGCGCTGCTC
AGGACCAAGG CGCACTTGCG CGACTACTTC GATGTAGTCC TGCTCGACCA GAACATGCCC
GGCATGACCG GCATGCAACT GGCCGCCAAG ATCAAGGAAG ACCCCAGCCT CAATCACGAC
ATTCTGCTGA TCATGCTCAC CGGCATCAGC AATGCGCCCA CCAAGATCAT TGCTCGCAAT
TGCGGCATCA AACGTATTCT GGCCAAACCG GTGGCGGGCT ATACGCTCAA GACCACGCTG
GCAGATGAGC TGACCCAACT GAACAAAGGC GTTGTTTTAG CCAAACCCGG CCCGGCCATG
CCCCCGCCGG TCAGCGTGCC CGGCGACTTC CGCATTCTGG TGGCCGAAGA CAACAGTATT
TCGACCAAAG TGATTCGCGG CATGCTCGGC AAGCTCAATC TGAACCCGGA CACCGCCAGC
AATGGTGAAG AAGCGCTGCG CGCCATGAAA GCGCAGCGTT ATGATCTGGT GCTGATGGAC
TGCGAAATGC CGATACTCGA CGGTTTCTCG GCCACCGAAC AACTGCGTGC CTGGGAAGTC
GGCAACCAGC GGGTACGCAC GCCGGTCGTG GCCCTGACCG CGCATATTCT CACCGAGCAC
AAGGACCGCG CGCGCCAGGC CGGCATGGAC GGCCACATGG CCAAGCCCAT CGAACTGTCC
CAGTTGCGCG AACTGGTCGA GCACTGGGTG GCGCACCGTG ACAAGGCCCG TGGGCTGACG
GCGGATGGCG AGCACTATCG GCAAAACTGA
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| Protein sequence | MRWLRIAIAS TVGLLTLLFM LSAQAEHGAG WSTLLDEKAR LSLDEIRSAR YQNQFSPIEL
ERVAAAERDS AVWLHYRLHP NQHEQLVRIF APDLASADMY VMDGDQQIDH LRTGNAVPTE
DQRLPSNDFL LPIPQSAASL DIYLRLVSSQ KMRPSITLEP AIQSAADETE PFLFGLLFGA
LAMLIVQNLT RYAHTRSRSN LWLAACESML GLSALLLLNL LRPIDPWHIA QTPSAHVALL
LAAVAGLIYT YCFFVHRNAR TLDRLLLGNA VLMGIGALLV VFDATLPINA LTFVLVSLTT
LSILAVSMWH WQKGYRSARL FVLGMITFNI GYMVVLPGLL WLSLVPPQWL ILALLCVFCI
SGLLMSLALS ERYRSITEDR FSVSRDQAAS TAEINAKAEF LAKISHEIRT PMNGVLGMTE
LLLGTPLSVK QRDYVQTIHS AGNELLTLIN EILDITKLES GQIELDDVQF DISALVEDCL
NIFRAKAEQQ QVELISQIQP QVPRVISGDP TRLRQTLLSL LENALKKTDE GEILLGVALE
SSKSGQPRLR ISVQDSGESL SDEERDELLH AELHSRNFLA SSRLGGHLGL VIARQLIILM
DGEFGIQNSG TPGNTLWLNL PLDAKLLEQP TIDLDSPLKD ARVLVVDDND TCRKVLVQQC
SAWGLNVSAV ASGKEALALL RTKAHLRDYF DVVLLDQNMP GMTGMQLAAK IKEDPSLNHD
ILLIMLTGIS NAPTKIIARN CGIKRILAKP VAGYTLKTTL ADELTQLNKG VVLAKPGPAM
PPPVSVPGDF RILVAEDNSI STKVIRGMLG KLNLNPDTAS NGEEALRAMK AQRYDLVLMD
CEMPILDGFS ATEQLRAWEV GNQRVRTPVV ALTAHILTEH KDRARQAGMD GHMAKPIELS
QLRELVEHWV AHRDKARGLT ADGEHYRQN
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