| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4851 |
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| Symbol | |
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| ID | 1186534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5495959 |
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| End bp | 5497218 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637396171 |
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| Product | bacterial type II/III secretion system protein |
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| Protein accession | NP_794585 |
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| Protein GI | 28871966 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTGTT GTTCCGTGCC CGCTATAAAA CCCGGGCTGC TGGTTTTACT TTTCACCGCC
TTGTCTGCGT CGTCAGCCTG GGCTGCGTCC GGCAGTTGTG CGGGACTGGC CGCGATGCCC
GCCGCCATGG AAATCGATCA GGGCATTCAA CAGAATGTCC GCTCTTCGGT GGCCATTACT
CGCATCGCCG TGGGCGACCC GAAAATCGCC GATGTGCACG TCAACGGCAG CGACGGCTTT
CTGCTGACCG GCGTGGCTCA GGGCACGACC AGCCTGATGG TCTGGACCAC CTGCGCCAGC
GCCCCGCGCC AGAGCATGGT GTTCGTGCGC GGCCGGGCTA CGGCGTCGAT GGTCGAACGT
GCAAACGCAC CTTCTGCCGA GGCCCACGAG GCGCAGTTGC CCAGCCAGGT GCAGACCGAC
ATCCGCTTCG TCGAAGTCAG CCGCACCAGG CTCAAGGAAG CCAGCATCTC GATCTTTGGC
AAAGGCTCGA ACAACTTTCT GTTTGGCGCG CCTGGCACGG TGCCCGGCGT CACCGTCACG
CCGGGCACCG TGAGTGGCAC CCTGCCGAGC ATCCCGTTGA ACAACGGCAA TTTCAATATC
GTCTGGGGCG GTGGCAGCAG CAAGGTGCTG GGCATGTTGA ATGCGATGGA AAACAGCGGC
TACGCCTACA CGCTGGCACG CCCCAGCCTG GTCGCACTCA ACGGGCAAAG CGCCAGCTTT
CTGGCCGGTG GCGAGTTCCC GGTGCCGGTG CCCAATGGCG AAGGCAACGG CATCTCCATC
GAGTACAAGG AGTTCGGCGT ACGTCTGACC CTGACGCCAA CGATAGTGGG ACGTGACCGG
ATCCTGCTCA AGGTGGCACC GGAGGTCAGC GAACTGGACT TCTCAGCCGG TATTACCATC
GCCGGCACAA CGGTGCCGGC GCTCAACATC CGTCGCACCG ACACCAGCAT TGCGCTGGCC
GACGGAGAAA GCTTCGTGGT CAGCGGGCTG ATCAGCTCCA GCAACGTCGG CGCTGTGGAC
AAGTTTCCTG GCCTGGGCGA CATACCGATT CTCGGTGCGT TTTTTCGCAG TTCGCAAATT
CAGCGCAATG AACGCGAACT GCTGATGATC GTCACCCCGC ACCTGGTCCA GCCCCTGGCC
GTCAACGCCC AACTGCCGTC GCTGCCGGGA GAGGGGCTGC GCAATTACGA TCCAAGCTTC
CCGCGCCTGC TCTTTATGGA GAGAGGCAAC TTCGACCGCA GCAACGGGTT ATCGCAATGA
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| Protein sequence | MSCCSVPAIK PGLLVLLFTA LSASSAWAAS GSCAGLAAMP AAMEIDQGIQ QNVRSSVAIT
RIAVGDPKIA DVHVNGSDGF LLTGVAQGTT SLMVWTTCAS APRQSMVFVR GRATASMVER
ANAPSAEAHE AQLPSQVQTD IRFVEVSRTR LKEASISIFG KGSNNFLFGA PGTVPGVTVT
PGTVSGTLPS IPLNNGNFNI VWGGGSSKVL GMLNAMENSG YAYTLARPSL VALNGQSASF
LAGGEFPVPV PNGEGNGISI EYKEFGVRLT LTPTIVGRDR ILLKVAPEVS ELDFSAGITI
AGTTVPALNI RRTDTSIALA DGESFVVSGL ISSSNVGAVD KFPGLGDIPI LGAFFRSSQI
QRNERELLMI VTPHLVQPLA VNAQLPSLPG EGLRNYDPSF PRLLFMERGN FDRSNGLSQ
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