| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4847 |
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| Symbol | |
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| ID | 1186530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5491550 |
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| End bp | 5493898 |
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| Gene Length | 2349 bp |
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| Protein Length | 782 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637396167 |
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| Product | penicillin-binding protein |
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| Protein accession | NP_794581 |
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| Protein GI | 28871962 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAACCTG AATTTCTTCT GCGCCTCGTG CAAAAACTCC AATGGCTGGC AGGTGGTGTT
TTGCTGCTGA TTGCCCTGCT CTGGCTGGCT GATCGCCTCT GGCCGTTGCC GCTGCCCAAG
GACGATCTGG CGCGTGTCGT GCTGGCCGAA GACGGCACGC CCTTATGGCG CTTTGCCGAT
GCCAACGGTG TGTGGCGCTA CCCGGTCACT AACCAGCAGG TTTCGCCCTA CTACCTTGAA
GCGCTGCTGA CCTACGAGGA TCGCTGGTTC TACAGCCACC CCGGCGTGAA CCCGCTGGCG
CTGGTGCGCG CCAGTTGGCA GAACCTCAGG GGTGCTCGCG TGGTGTCGGG CGGCAGTACG
CTGTCGATGC AGGTTGCGCG GCTGCTCGAC CCGCACTCGC GAACCCTGCC CGGCAAGTTT
CGCCAACTGT GGCGCACGTT GCAGCTGGAA TGGCACCTGT CCAAGGATGA AATCCTCAGC
CTGTACCTCA ATCGCGCGCC GTTTGGCGGC ACGCTGCAAG GGGTGGCGGC CGCCAGTTGG
GCGTATCTGG GCAAATCCCC ACAGAACCTG ACCCGCGCCG AAGCAGCCTT GCTGGCCGTG
CTGCCGCAGG CGCCGAGCCG TCTGCGCCCC GACCGTCATC CGCAACGTGC ACAGTTGGCC
CGCGACAAGG TTCTCAGGCG TCTGGCCGAG TTTCAGGTGT GGCCGCAAGG CAGCGTCGAC
GAGGCGCTGG AAGAGCCGTT ATGGCTGGCG CCGCGCCAGG AACCGAGCCT GGCGCCACTG
CTGGCACGAC GCCTGAACCG ACCGAACAGC CCGCCACTGA TCCGCACCAC GCTGGATGCC
CCGCTGCAAC GGCGCATGGA AGATTTGCTG ATGGGCTGGC GGGCACGGCT GCCGGAGCGC
ACCTCGGCAG CGATTCTGGT AGTCGAGGCA GAGAACATGG CGGTGCGCGC CTACGTGGGC
TCGGTGGATA TCAGCGACGT CAAGCGTTTC GGCCATGTGG ACATGGTGAC CGCACTGCGC
TCGCCGGGCT CGACGCTCAA ACCGTTCCTC TACGGCATGG CAATGGACGC CGGGTTGATC
CACTCCGAAT CACTGATGCA GGACGTGCCG CGCCGCTATG GCGACTACCG GCCAGGCAAC
TTTTCGACCG GGTTCGGCGG GCCGGTGGCT GCCAGTTCTG CGCTGTCGAT GTCCCTCAAC
CTGCCTGCCG TGCAGTTGCT GGAGGTCTAC GGCCCGAAAC GCTTCGCCGC AGAACTGCGT
AATGGCGGTG TACCGCTGAC CCTGCCGCCG CTGGCCGAGC CCAATCTGGC GCTGATTCTG
GGCGGGGCCG GCAGTCGGCT GGAAGATCTG GTCGCTGGCT ACAGCGCCTT CGCCCGTGGC
GGGCGGAGTG CCGACGTCAG GTTGCAGCCG CAGGACCGCC TGCGTGAGCG GCGGATGATG
TCGCCGGGGG CTGCGTGGAT TATCCGGCGG ATTCTCAGCG GCCAGTCGCG CCCGGACATT
GATCCGCGTG CAGAGCTGGT GCAGCGTCCG CAACTGGCCT GGAAGACCGG CACCAGCTAT
GGCTTTCGCG ATGCCTGGGC AATTGGCGTC GGGCCGCGCT TTCTGGTCGG CGTGTGGATC
GGCAGGCCGG ACGGTACGCC GGTGCCGGGC CAGTTCGGCC TGGCCTCGGC TGCGCCGCTG
ATGCTGCAGG TACACGATGT ACTGGTCAAT CGCGACAGCC AGCGCGGCAT CGCTGCGCCA
GTGCAAGCGG TGCCGTTGAA CGTTGGCGTG GCAGCGATCT GTTGGCCGTT GGGGCAACCG
ATGAGCAAGA GCGATCCGAA CTGCCGTCGC CAGCGCTTCG CCTGGACGCT GGACGACACC
ACGCCGCCGA CCCTGCAAGC CGCCGATCAA CCGCTTGGGC TGGGTTTACA GGAACGTATC
TGGGTCAATG ACAAAGGCTT GCGTGTCAGT GCCAGTTGTT CGGATGCCCA ACCGCGAGAC
ATCGCGCTGT GGCCTGCGCC GCTGGAGCCC TGGCTGCCCA GGGCCGAAAG ACGCGAAGCG
CGCTTGCCAC CCGCCGACCC GGACTGCCCG CCACAGAACC TCTCCCAGGC ACCGCCGCTG
AGTATTGTCG GCGTGCGCGA AGGCGACAAC CTGCGCTTGC CCGCTGGCAG CCGTCAGGCT
CTGCGCTTGA AACTCTCGGC TCTGGGCGGC AGCGGTCGGC GCTGGTGGTT CATCGACGGC
GCGCCAATGG CAGACACCGA CGCCGGACAC GACTTCACCC CGACCCTGAA CAAACCGGGC
CGCTACCAAC TGAGCGTCCT GGACGAAAGC GGCCAGACCG CGAGGGTAGA ATTCAGCGTG
GTGGAGTGA
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| Protein sequence | MKPEFLLRLV QKLQWLAGGV LLLIALLWLA DRLWPLPLPK DDLARVVLAE DGTPLWRFAD
ANGVWRYPVT NQQVSPYYLE ALLTYEDRWF YSHPGVNPLA LVRASWQNLR GARVVSGGST
LSMQVARLLD PHSRTLPGKF RQLWRTLQLE WHLSKDEILS LYLNRAPFGG TLQGVAAASW
AYLGKSPQNL TRAEAALLAV LPQAPSRLRP DRHPQRAQLA RDKVLRRLAE FQVWPQGSVD
EALEEPLWLA PRQEPSLAPL LARRLNRPNS PPLIRTTLDA PLQRRMEDLL MGWRARLPER
TSAAILVVEA ENMAVRAYVG SVDISDVKRF GHVDMVTALR SPGSTLKPFL YGMAMDAGLI
HSESLMQDVP RRYGDYRPGN FSTGFGGPVA ASSALSMSLN LPAVQLLEVY GPKRFAAELR
NGGVPLTLPP LAEPNLALIL GGAGSRLEDL VAGYSAFARG GRSADVRLQP QDRLRERRMM
SPGAAWIIRR ILSGQSRPDI DPRAELVQRP QLAWKTGTSY GFRDAWAIGV GPRFLVGVWI
GRPDGTPVPG QFGLASAAPL MLQVHDVLVN RDSQRGIAAP VQAVPLNVGV AAICWPLGQP
MSKSDPNCRR QRFAWTLDDT TPPTLQAADQ PLGLGLQERI WVNDKGLRVS ASCSDAQPRD
IALWPAPLEP WLPRAERREA RLPPADPDCP PQNLSQAPPL SIVGVREGDN LRLPAGSRQA
LRLKLSALGG SGRRWWFIDG APMADTDAGH DFTPTLNKPG RYQLSVLDES GQTARVEFSV
VE
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