| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4845 |
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| Symbol | |
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| ID | 1186528 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5485965 |
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| End bp | 5490914 |
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| Gene Length | 4950 bp |
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| Protein Length | 1649 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637396165 |
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| Product | lipoprotein, putative |
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| Protein accession | NP_794579 |
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| Protein GI | 28871960 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2373] Large extracellular alpha-helical protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.566822 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAAACA AAGGATTGTT TCTGGCTTGC GCGCTCGCGC TGCTGAGCGC CTGTGATTCG
TCTACCCCGG ATAAACCAGC GCCCGCCACG GCACCCACCA CCCAGGCAAC GGTTGCCGAT
ACCAAGCCCA GGCCCGCAGT CGACCTAGCC GCGCTGAGCA AGCGTTATGC AGGCCGTGAA
CTGACGGTCA TCGATGTGTC GGAAATTCAG GTAGACGGCG CAAGCACGCT GTCGGTGAGT
TTTTCTGTGC CGCTGGACCC GGAGCAGAAG TTTGCTGAAA AACTGCATCT GGTGGACAGC
AAGAACGGCA AGGTCGATGG CGCCTGGGAG CTGTCGGACA ACCTCATGGA GTTGCGCCTG
CGCCATCTGG AGCCGCAGCG CAAACTTGTG CTGACGGTCG ATGCCGGGCT GCTGGCGGTC
AACAAGGCCA AGCTCGCGGC CGAATACATC AGCCGCCTGG AAACCCGCGA CCTGCAACCC
ACTGTCGGCT TCGCCAGTCG TGGCAGCCTG CTGCCGACGC GTCTGGCCGA GGGCTTGCCG
GTCATCGCCT TGAACGTCGA CAAGGTCGAT GTCGAATTCT TCCGGGTCAA ACCCGACGCG
ATGCCGAACT TCCTCGCCCA GTGGGACGGC GCATCCAGCC TGTCCAGCTA CAGCTCCGAA
GAACTGCTGC CTATGGCCGA TCTGGTCTAC GGCGGCCGCT TCGACCTCAA GCCTGCGCGC
AACACCCGCG AAACCGTGCT GCTGCCGATT GCCGGCATCA AGGCGCTGCA ACAACCGGGC
GTTTACCTCG CGGTCATGCG CGCATCCGGC ACTTACAGCT ACTCGCAACC GGCCACCCTG
CTCACCCTCA GCGACATCGG CCTGTCGGTG CACCGTTACA GCAATCGTCT GGATGTCTTC
ACCCAGGCAC TCGAGGGCGG CAAGGCTCTG GGCGACGTAA GCGTGGATGT GTACGACGAC
AACGGCAAGG TCGTCGCGCA AGGCAAAACC GACAGCGACG GCCACGCCCG ACTGCCGTTG
CCCGCCAAGG CTGCAGTGGT GCTGGCGCAC AAAGACGAAC AGACCAGCAT GCTGCGCCTG
AACAGCTCGG CGCTGGATCT GGCCGAGTTC GACATTTCCG GCCCGCAGGC GCACCCGCTG
CAATTCTTCA TTTTCGGCCC GCGCGACCTG TACCGTCCCG GCGAAACCGT GCTGCTCAAC
GGTCTGCTGC GTGACAGCGA CGGCAAAAAC GTCAAACCAC AACCGATCAC CGTCGAAGTG
CGCCGCCCCG ACGATCAGGT CAGCCGCAAG TTTGTCTGGG AAGCCGATAG CAGTGGCTTC
TACCAGTATC AATTGCAACT TGCCGAAGAA GCCCCGACCG GGCGCTGGCA ACTGGTGTTC
GACCTGGGCG ACGGCAAGCC TCAGCTTTAC GAGTTCAAGG TTGAAGACTT CCTGCCTGAG
CGTCTGGCTC TGGAACTCAA AGGCAGCGAC GCGCCTGTCG CGCCTGCTGA CAACCCCGAG
TTCGACATCA CCGGCCGCTA CCTGTATGGC GCGCCTGCGT CGGGCAACAC CCTGACCGGT
CAGGTGTATG TGCGTCCATT GCGCGAAGCG GTGGCCAAAC TGCCGGGCTA TCAGTTCGGC
TCGATCACCG AAGAAGACCT CAAGCATGAC ATGGAGGTTG AACCCGTCAC CCTCGATGCC
GAAGGCCACT CGACGCTCTC CGTGCAAACC CGGTGGGCAG AGGCCAAATC CCCGCTGCAA
CTGATTCTGC AAGCCAGCCT GCAAGAGTCT GGCGGGCGGC CGATTACCCG CCGTCTGGTG
CAACCGATCT GGCCCGCCGA GCACCTGCCC GGCGTACGCG CACTGTTTGG CAGCAGCTCC
GGTGGCGAAG ACTACGACGA GGAAGCCAGC AAGGGCGAAG CCCAGACCAA CGGTGACGGC
CCGGCCGAGT TTGAAATCGT GATGGCCGAT GCCACTGGCA ACAAGCTGGC CGCGGATAAC
GTCAAGGTCA GGCTGATCCG TGAGCGTCGC GACTACTACT GGAACTACTC GGCCGATGAC
GGCTGGAGCT ACCACTTCAA CGAGAAATTC CTCAACCTGA ACGAGGAAAC CCTCAGCATC
ACCAAGGACT CCACGGCCAA AATCAGTTTC CCGGTCGAAT GGGGCCCATA CCGTGTCGAG
GTGGAAGACC CTTCCACCGG CATGATCAGC AGCCTGCGTT TCTGGGCCGG TTATCGCTGG
CAGGACAACA CCGACGGCGG CGCGGTCAGG CCGGATCAGG TCAAGCTGGC GCTGGACAAA
CCGGCCTACA ACGATGGCGA CACCGCCAAA GTCACAGTGA CCCCTCCGGC CGCTGGCAAA
GGCTACCTGC TGATCGAGTC CAGCGAAGGT CCGCTGTGGT GGAAGGAAAT CGACGTGCCT
GCCGAAGGCA AGTCGTACGA AATCCCGCTC GACAAGCAAT GGGCGCGTCA CGACCTGTAC
GTTACCGCGC TGGTGATACG CCCCGGCGAA CGCAAGGCCA ATGTCACGCC CAAGCGCGCC
GTGGGTGTGC TGCACCTGCC GCTGGACCGT GCACAACGCA AGCTGGCGCT GACCGTTACC
GCGCCGGAAA AAATGCGCCC CAAACAGCCG CTTACTCTCA AGGTTGTCGC CAAAAACGCC
GATGGCAGCG TGCCCGAACA AGTGCAAGTG CTGGTGTCGG CGGTGGACGT CGGCATTCTC
AACATCACCC GCTACGCCAC GCCCGACCCG TTTGCCAGTC TGTTCGGGCG CAAGCAATAC
GGCGCTGACC AACTGGATAT CTATGGCCAG TTGATCGAAG CCGGCCAGGG TCGCCTGGCG
AGCATGGCGT TCGGCGGTGA TGCGCTGGCC AAGGGCGGCA AACGCCCGGA CACCAGCGTC
ACCATCGTTG CGCTGCAAAG CGCTCCGGTA ACGCTCAATG AAGCCGGTGA AGGTGAGGTC
AGCGTCGATA TTCCTGACTT CAACGGCGAA CTACGCGTCA TGGCTCAGGC CTGGACCGAC
GACCGCTATG GCATGGCCGA GGCGAAAACC GTGGTGGCTG CGCCGATCAT CGCCGAGCTG
TCGACGCCGC GCTTCCTGGC CGGTGGCGAC CAGACCAGTA TCGCGCTGGA CGTCTCCAAC
CTGTCGGGCA CAGCACAGAA GCTGGACGTA AAAATCAGCG CCGAAGGCCA GTTGAGCATT
CCCGGCGGCG ATCAGAGCAA GCCCTTGCAG CTCAAGCAAG GCCAGCGCGT CACCCTGAAA
GTGCCGGTAT TGGCGCAAGG TGGCCTGGGC CAAGGCAAGA TCAAGGTGCT GGTGGAAGGC
CTGGAGCTGC CAGGTGAAAA CCTGCCCGCC TTCACCCGCG AATGGACCGT TGGCGTGCGC
CCCGCCTACC CGGCGATGCT CAAGCATTAC CGTGCCACCC TCAACGACCA GACCTGGAGC
CTGCCGGACG GCGCACTTGA GTCCTTCGAG CCTGCCGGTC GCCAAGCGCT ACTGTCGCTG
TCGAGCCGTC CGCCGCTGAA CCTCGGCGAA CAGATTCGGG CACTGAAAGC CTATCCATAC
GGTTGTCTGG AACAGACCGC CAGCGGCCTG TATCCATCGC TGTACGCCGA TGCCGCAACC
CTCAAACGTC TTGGCCTGAC CGGCGAGCCG GATGCCGAAC GCAAGCGCAA GGTCGAGATC
GGCATCGAGC GCCTGCTGGG CATGCAGCGT TACAACGGCA GCTTTGGCCT GTGGGGCTCG
GACAGCGACG AAGAGTACTG GCTGACCGCC TACGTCACCG ACTTCCTGCT GCGCGCCCGC
GATCAGGGCT TTGCCGTACC TGCGGACTCG CTGAAGAAGG CTAATGAACG TCTGCTGCGC
TACTTGCAGG ACGCGGGGCA GATTCAGGTC AATTACAGCC AGAACGCCGA GCACACCCGC
TTTGCCGTGC AGGCTTACGC CGGGCTGGTG CTGTCACGCA GTCAACAGGC ACCGCTTGCG
GCATTGCGCA GCCTGTTCGA CCGCCGCAGC GATGCGCGCT CGGGCCTGCC GCTGGTGCAA
CTGGCCGTGG CGCTGGAGAA GATGGGCGAC AAACCGCGCG CTGATCTGGC CCTTACCGCA
GGCCTGGCCG TCGGGCGCAA GAACGAATGG CTGGCCGACT ACGGCAGTTC GCTGCGTGAT
CAGGCGCTGA TTCTGGCATT GCTGGAAGAG AACGACATCG CCAAGGACAA GCGCGACGAG
CGGCTGTTTG CCCTGGCCGA TGAAGTCGCG GCCAGCCGTT ACCTGTCCAC TCAGGAAAGC
AATTCGCTGT TCCTCGCCGG TCGCAACCTG CTGGGCAAAC CGGAGAAGGA CTGGACCGCC
AGCATTGCCA GCGGCACCGA AACCCGCGAG CTGAGCAACA AACAGCCAGG CCTCAAGCTG
GACGGTGCAC TGCTGGGTTC ACCGCTTACG GTTCACAATC AGGGCAGCGA GCCGCTCTAC
CAACAGCTGA CGGTTTCGGG TTACCCGACC CAGGCACCTG CGGCGGGCGG TGAGAACCTG
AGCATTCGTC GCGAATACCT GAGCCTGAGC GGCGCGCCGC TGAACGTCGG CGCGCTGAAA
ACCGGGCAAC TGGTACTGGT GCATCTGGAG ATCGGTGCCA AGCAGCGTGT GCCCGATGCC
TTGGTGGTGG ACTTGCTGCC GGCAGGTCTG GAACTTGAAA ACCAGAACCT GGCGCAAAGC
TCGGCCAGCC TGGAAGACGC CAGCGAAGAG GTGAAAACCA TCCGTGAGTC GATGGAAAAC
GCCGGGATCA AGCATCAGGA ATATCGCGGT GATCGTTACG TGGCGGCGCT GGATATCGAC
GGCAACCGCA GCGTGCACCT GCTCTATCTG GCACGTGCAG TCACACCGGG TACATACCGC
GTGCCGCCGC CACAGGTGGA ATCCATGTAC CGCCCGAACT GGCAGGCTCT GGGTGATGCA
CCCGCACAGA TGGTGGTAAA GGGCAAATGA
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| Protein sequence | MLNKGLFLAC ALALLSACDS STPDKPAPAT APTTQATVAD TKPRPAVDLA ALSKRYAGRE
LTVIDVSEIQ VDGASTLSVS FSVPLDPEQK FAEKLHLVDS KNGKVDGAWE LSDNLMELRL
RHLEPQRKLV LTVDAGLLAV NKAKLAAEYI SRLETRDLQP TVGFASRGSL LPTRLAEGLP
VIALNVDKVD VEFFRVKPDA MPNFLAQWDG ASSLSSYSSE ELLPMADLVY GGRFDLKPAR
NTRETVLLPI AGIKALQQPG VYLAVMRASG TYSYSQPATL LTLSDIGLSV HRYSNRLDVF
TQALEGGKAL GDVSVDVYDD NGKVVAQGKT DSDGHARLPL PAKAAVVLAH KDEQTSMLRL
NSSALDLAEF DISGPQAHPL QFFIFGPRDL YRPGETVLLN GLLRDSDGKN VKPQPITVEV
RRPDDQVSRK FVWEADSSGF YQYQLQLAEE APTGRWQLVF DLGDGKPQLY EFKVEDFLPE
RLALELKGSD APVAPADNPE FDITGRYLYG APASGNTLTG QVYVRPLREA VAKLPGYQFG
SITEEDLKHD MEVEPVTLDA EGHSTLSVQT RWAEAKSPLQ LILQASLQES GGRPITRRLV
QPIWPAEHLP GVRALFGSSS GGEDYDEEAS KGEAQTNGDG PAEFEIVMAD ATGNKLAADN
VKVRLIRERR DYYWNYSADD GWSYHFNEKF LNLNEETLSI TKDSTAKISF PVEWGPYRVE
VEDPSTGMIS SLRFWAGYRW QDNTDGGAVR PDQVKLALDK PAYNDGDTAK VTVTPPAAGK
GYLLIESSEG PLWWKEIDVP AEGKSYEIPL DKQWARHDLY VTALVIRPGE RKANVTPKRA
VGVLHLPLDR AQRKLALTVT APEKMRPKQP LTLKVVAKNA DGSVPEQVQV LVSAVDVGIL
NITRYATPDP FASLFGRKQY GADQLDIYGQ LIEAGQGRLA SMAFGGDALA KGGKRPDTSV
TIVALQSAPV TLNEAGEGEV SVDIPDFNGE LRVMAQAWTD DRYGMAEAKT VVAAPIIAEL
STPRFLAGGD QTSIALDVSN LSGTAQKLDV KISAEGQLSI PGGDQSKPLQ LKQGQRVTLK
VPVLAQGGLG QGKIKVLVEG LELPGENLPA FTREWTVGVR PAYPAMLKHY RATLNDQTWS
LPDGALESFE PAGRQALLSL SSRPPLNLGE QIRALKAYPY GCLEQTASGL YPSLYADAAT
LKRLGLTGEP DAERKRKVEI GIERLLGMQR YNGSFGLWGS DSDEEYWLTA YVTDFLLRAR
DQGFAVPADS LKKANERLLR YLQDAGQIQV NYSQNAEHTR FAVQAYAGLV LSRSQQAPLA
ALRSLFDRRS DARSGLPLVQ LAVALEKMGD KPRADLALTA GLAVGRKNEW LADYGSSLRD
QALILALLEE NDIAKDKRDE RLFALADEVA ASRYLSTQES NSLFLAGRNL LGKPEKDWTA
SIASGTETRE LSNKQPGLKL DGALLGSPLT VHNQGSEPLY QQLTVSGYPT QAPAAGGENL
SIRREYLSLS GAPLNVGALK TGQLVLVHLE IGAKQRVPDA LVVDLLPAGL ELENQNLAQS
SASLEDASEE VKTIRESMEN AGIKHQEYRG DRYVAALDID GNRSVHLLYL ARAVTPGTYR
VPPPQVESMY RPNWQALGDA PAQMVVKGK
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