Gene PSPTO_4842 details

Gene Information

• Locus tag: PSPTO_4842
• Symbol: speA
• ID: 1186525
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 5481297
• End bp: 5483210
• Gene Length: 1914 bp
• Protein Length: 637 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637396162
• Product: biosynthetic arginine decarboxylase
• Protein accession: NP_794576
• Protein GI: 28871957
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1166] Arginine decarboxylase (spermidine biosynthesis)
• TIGRFAM ID: [TIGR01273] arginine decarboxylase, biosynthetic

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.540433
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCGTAC GACGCACACG CAAAGACGAT GGCAGCCAAT GGACAGTTGC GGACAGCCGC 
AGCGTTTATG GCATTCGCCA TTGGGGCGCG GGTTATTTTG CAATCAACGA GGCGGGCCGC 
GTTGAAGTTC GCCCCAACGG GCCGGACAGC TCGCCCATCG ATCTCTATGA GCAAGTCGAC 
AACCTGCGCA AAAGTGGCCT GTCGCTGCCG TTGCTGGTGC GCTTCCCCGA TATTCTGCAG 
GACCGCGTGC GTCAACTGAC CGGCGCATTC GACAGCAACA TCGCGCGCCT GGAATACCAG 
AGCCAATACA CCGCGCTGTA CCCGATCAAG GTCAACCAGC AGGAAGCGGT GGTGGAAAAC 
ATCATCGCCA CGCAGAACGT CTCGATTGGT CTGGAAGCCG GCTCCAAGCC TGAACTGATG 
GCCGTGCTGG CCCTGGCGCC CAAAGGCGGC ACCATCGTCT GCAACGGTTA CAAGGACCGC 
GAGTTCATCC GGCTGGCGCT GATGGGCCAG AAGCTGGGCC ACAACGTGTT CATCGTCATC 
GAGAAAGAAT CCGAAGTCGA ACTGGTCATC GAAGAAGCCG CCGAGCTTAA AGTCGCCCCT 
CAGGTTGGCC TGCGCGTGCG CCTGTCGTCC CTTGCGTCGA GCAAGTGGGC AGACACGGGC 
GGCGAGAAAT CCAAGTTCGG TCTGTCTGCC GCGCAATTGC TCTCAGTGGT CGAGCGCTTC 
CGCAAGGCAG GCCTCGATCA GGGCATCCGC CTGCTGCACT TTCACATGGG CTCGCAGATC 
GCCAACCTGG CGGACTACCA GCACGGCTTC AAGGAAGCGA TCCGCTACTA CGGCGAACTG 
CGCAAACTCG GCCTGCCGGT GGACTACATC GACGTCGGCG GCGGTCTGGG CGTCGATTAC 
GACGGCACTC ACTCGCGCAA TGCCAGCTCG ATCAACTACG ACATGGACGA TTACGCCGGT 
GTCGTGGTCG GCATGCTCAA GGAATTCTGC GACGCGCAGA GCCTGCCGCA CCCGCACATT 
TTCTCGGAAA GCGGCCGCTC GCTGACCGCC CACCACGCCA TGCTGGTGGT GCAGGTTACC 
GACGTCGAGA AGCATAACGA CGAAGTGCCG AAGATTGCCG ACAAGGAAAG CCTGCCGGAG 
ACCGTGCAGT GGCTGGTTGA CCTGCTGGGG CCGACCGACA TCGAGATGGT CACCGAAACC 
TACTGGCGCG CCACGCACTA CATGAGCGAC ATCGCCACCC AGTACGCCGA TGGCAAGATC 
AGCCTGGCCG AGAAGGCGCT GGGCGAACAA TGCTACTTCG CTGTCTGCCG CCGTTTGTAC 
AATTCGCTGA AAGCCCGTCA ACGCTCGCAT CGTCAGGTGC TGGACGAGCT CAATGACAAG 
CTGGCCGACA AGTACATCTG CAACTTCTCG GTGTTCCAGA GCCTGCCGGA CACCTGGGCA 
ATCGGCCAGG TGTTGCCGAT CCTGCCGTTG CATCGCCTCG ACGAGGAGCC GGTACGCCGC 
GCCGTGCTGC AAGACCTGAC CTGCGATTCC GACGGCAAGA TCAAGCAATA CGTCGACGAG 
CAGAGCATCG AGACCAGCAT GCCGGTGCAT TCGCTGAACG AAGGCGAAGA CTATCTGCTG 
GGCATCTTTC TGGTGGGCGC TTATCAGGAA ATTCTGGGCG ACATGCACAA TCTGTTCGGT 
GACACCGACT CGGTGAACAT CTACCAGAAC CCGGACGGCA GCGTGTACCA CGCCGGTATC 
GAGACCCACG ACACCATCGA AGACATGCTG CGCTACGTGC ATTTGTCGCC GGAAGAACTG 
ATGACCCATT ATCGGGACAA GGTCGCCAGC GCCAAGATCA CCCCACGCGA ACGCACCTAC 
TTCCTCGACG CCCTGCGCCT AGGCCTGACC CGCTCGTCGT ACTTGTCGTC CTGA 

 

Protein sequence

MSVRRTRKDD GSQWTVADSR SVYGIRHWGA GYFAINEAGR VEVRPNGPDS SPIDLYEQVD 
NLRKSGLSLP LLVRFPDILQ DRVRQLTGAF DSNIARLEYQ SQYTALYPIK VNQQEAVVEN 
IIATQNVSIG LEAGSKPELM AVLALAPKGG TIVCNGYKDR EFIRLALMGQ KLGHNVFIVI 
EKESEVELVI EEAAELKVAP QVGLRVRLSS LASSKWADTG GEKSKFGLSA AQLLSVVERF 
RKAGLDQGIR LLHFHMGSQI ANLADYQHGF KEAIRYYGEL RKLGLPVDYI DVGGGLGVDY 
DGTHSRNASS INYDMDDYAG VVVGMLKEFC DAQSLPHPHI FSESGRSLTA HHAMLVVQVT 
DVEKHNDEVP KIADKESLPE TVQWLVDLLG PTDIEMVTET YWRATHYMSD IATQYADGKI 
SLAEKALGEQ CYFAVCRRLY NSLKARQRSH RQVLDELNDK LADKYICNFS VFQSLPDTWA 
IGQVLPILPL HRLDEEPVRR AVLQDLTCDS DGKIKQYVDE QSIETSMPVH SLNEGEDYLL 
GIFLVGAYQE ILGDMHNLFG DTDSVNIYQN PDGSVYHAGI ETHDTIEDML RYVHLSPEEL 
MTHYRDKVAS AKITPRERTY FLDALRLGLT RSSYLSS