| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4824 |
|---|
| Symbol | rodA |
|---|
| ID | 1186507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5461949 |
|---|
| End bp | 5463094 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637396144 |
|---|
| Product | rod-shape-determining protein RodA |
|---|
| Protein accession | NP_794558 |
|---|
| Protein GI | 28871939 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG0772] Bacterial cell division membrane protein |
|---|
| TIGRFAM ID | [TIGR02210] rod shape-determining protein RodA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGAGTA ATTTCGACCG CATCCTGTCC AGCGAAGACG TGATGCGTCG CCGCGCCACG
TTTCTGCAGC GCATTCATAT CGATGGCCCG TTGCTGATCC TGCTGCTGAC CCTGGCGGCG
GGCAGCCTGT TTGTCCTGTA TTCGGCCAGC GGCAAGAACT GGGACCTGCT GATCAAGCAG
GCCAGTTCGT TCGGCATCGG TCTGGTGGCG ATGGTGGTGA TTGCCCAGCT GGAGCCCCGT
TTCATGGCGC GCTGGGTGCC GGTGCTTTAT GTGATTGGCG TGCTGTTGCT GGTGGTTGTG
GATGTGATGG GCCATAACGC AATGGGTGCG ACCCGCTGGA TCAATATTCC CGGCGTGATT
CGCTTCCAGC CTTCGGAGTT TCTCAAGATC ATCATGCCGG CGACCATCGC CTGGTACCTG
TCCAAGCGCA CGTTGCCGCC GCACCTCAAG CATGTCGGGG TCAGTCTGGC GCTGATCGGT
GTGCCGTTCA TTCTGATCGT GCGCCAGCCC GACCTCGGCA CATCGTTGCT GATTCTGGCG
TCCGGGGCCT TTGTGCTGTT CATGGCAGGC CTGCGCTGGC GCTGGATTCT CAGTGTGCTG
GCGGCTGCCG TGCCTGCGGC GGTGGCCATG TGGTTCTTCT TCATGCACGA CTACCAGAAA
CAGCGCGTAC TGACGTTTCT CGACCCGGAA AGCGATCCGC TGGGCACCGG CTGGAACATC
ATCCAGTCCA AGGCAGCCAT TGGTTCGGGC GGCGTATTTG GCAAGGGCTG GTTGCTGGGC
ACCCAGTCGC ACCTCGACTT TCTGCCGGAA AGCCACACCG ACTTCATCAT TGCGGTGCTG
GGCGAGGAGT TCGGACTGGT GGGCATCTGT GCGCTGCTGA TCATCTATAT GTTGCTGATC
GGTCGCGGGC TGGTGATCAC TGCGCAAGCA CAGACACTGT TCGGCAAATT GCTGGCCGGC
GCGTTGACCA TGACGTTTTT TGTTTACGTT TTCGTCAACA TCGGTATGGT CAGTGGCCTG
CTGCCAGTGG TGGGCGTACC ACTGCCCTTC ATTAGCTACG GCGGAACTTC GCTCGTGACC
CTACTGTCAG CGTTTGGGGT TTTGATGTCG ATCCATACAC ACCGTAAATG GATCGCTCAA
GTTTGA
|
|---|
| Protein sequence | MKSNFDRILS SEDVMRRRAT FLQRIHIDGP LLILLLTLAA GSLFVLYSAS GKNWDLLIKQ
ASSFGIGLVA MVVIAQLEPR FMARWVPVLY VIGVLLLVVV DVMGHNAMGA TRWINIPGVI
RFQPSEFLKI IMPATIAWYL SKRTLPPHLK HVGVSLALIG VPFILIVRQP DLGTSLLILA
SGAFVLFMAG LRWRWILSVL AAAVPAAVAM WFFFMHDYQK QRVLTFLDPE SDPLGTGWNI
IQSKAAIGSG GVFGKGWLLG TQSHLDFLPE SHTDFIIAVL GEEFGLVGIC ALLIIYMLLI
GRGLVITAQA QTLFGKLLAG ALTMTFFVYV FVNIGMVSGL LPVVGVPLPF ISYGGTSLVT
LLSAFGVLMS IHTHRKWIAQ V
|
|---|
| |