| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4804 |
|---|
| Symbol | miaB |
|---|
| ID | 1186487 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 5442888 |
|---|
| End bp | 5444216 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637396124 |
|---|
| Product | tRNA-i(6)A37 modification enzyme MiaB |
|---|
| Protein accession | NP_794538 |
|---|
| Protein GI | 28871919 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.557764 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGA AGCTTTACAT CGAAACCCAC GGTTGCCAGA TGAACGAGTA CGACAGCTCG
CGCATGGTCG ATCTGCTGGG CGAACATCAG GCTCTGGAAG TCACCGCTCG CGCGGAAGAC
GCCGACGTGA TCCTGCTCAA CACCTGCTCG ATTCGCGAGC GTGCGCAAGA CCGGGTCTAT
TCGCAGCTCG GCCGCTGGCG TGAGCTGAAA CTGGCCAACC CCGAGATGGT GATTGCCGTC
GGCGGCTGTG TTGCCAGCCA GGAAGGCGCG GCCATCCGCG ACCGCGCGCC CTACGTGGAC
GTGGTGTTCG GCCCGCAAAC ATTGCACCGC CTGCCGGAAA TGATCGACGC AGCGCGCATC
ACCCGCTTGC CGCAGGTCGA TGTTTCATTC CCCGAGATCG AAAAATTCGA CCACTTGCCC
GAGCCGCGCG TGGATGGCCC GAGTGCTTAC GTGTCGGTGA TGGAAGGCTG CAGCAAGTAC
TGCACCTTCT GCGTGGTGCC CTACACGCGC GGCGAAGAAG TCAGCCGACC GTTCGATGAC
GTGCTGACCG AGGTCACTCA CCTGGCCGAA CACGGCGTGC GCGAAGTCAC ACTGCTGGGG
CAGAACGTCA ACGGTTATCG CGGCACCACC CATGACGGGC GAGTCGCCGA CTTGGCTGAT
CTGATTCGGG CAGTTGCCGT CGTCGATGGC ATCGACCGCA TTCGTTACAC AACCTCGCAC
CCGCTCGAGT TTTCCGACAG CCTGATTCAG GCGCACGCCG ACGTGCCGGA ACTGGTCAAG
CACCTGCATT TGCCGGTGCA GTCAGGTTCG GACCGCATTC TGGCGGCCAT GAAACGCAAC
CACACCACGC TGGAATACAA GTCCAGGCTA CGCAAGCTTC GGGCGGCAGT GCCGGGTATC
AGCATCAGTT CCGACTTCAT CGTTGGCTTC CCCGGTGAAA CCGAAAAGGA TTTCGACAAC
ACCATGAAGC TGATCGAAGA CGCCGGTTTC GACTTCTCGT TCTCGTTCAT TTACAGCCCG
CGCCCCGGCA CACCGGCCGC TGACCTGAAA GACGACACGC CGGAAGCGCT GAAAAAAGAG
CGACTGGCCG CGTTGCAACA TCGCCTGAAC CAACAGGGTT TCGAGATCAG CCGACAGATG
GTTGGCAGCA TCCAGCGTAT TCTGGTTACA GATTACTCAA AGAAAGACCC CGGCGAACTG
CAAGGTCGCA CCGAGAACAA CCGGATTGTC AATTTTCGCT GCGACAATCC CCGCCTGATC
GGGCAGTTTG CCGACGTACA CATTGATGAT GCGCAGCCCC ACTCGTTGCG TGGCTCGCTG
CTACAGTAA
|
|---|
| Protein sequence | MAKKLYIETH GCQMNEYDSS RMVDLLGEHQ ALEVTARAED ADVILLNTCS IRERAQDRVY
SQLGRWRELK LANPEMVIAV GGCVASQEGA AIRDRAPYVD VVFGPQTLHR LPEMIDAARI
TRLPQVDVSF PEIEKFDHLP EPRVDGPSAY VSVMEGCSKY CTFCVVPYTR GEEVSRPFDD
VLTEVTHLAE HGVREVTLLG QNVNGYRGTT HDGRVADLAD LIRAVAVVDG IDRIRYTTSH
PLEFSDSLIQ AHADVPELVK HLHLPVQSGS DRILAAMKRN HTTLEYKSRL RKLRAAVPGI
SISSDFIVGF PGETEKDFDN TMKLIEDAGF DFSFSFIYSP RPGTPAADLK DDTPEALKKE
RLAALQHRLN QQGFEISRQM VGSIQRILVT DYSKKDPGEL QGRTENNRIV NFRCDNPRLI
GQFADVHIDD AQPHSLRGSL LQ
|
|---|
| |