| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4790 |
|---|
| Symbol | |
|---|
| ID | 1186473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 5429235 |
|---|
| End bp | 5430128 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637396111 |
|---|
| Product | cation efflux family protein |
|---|
| Protein accession | NP_794525 |
|---|
| Protein GI | 28871906 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0053] Predicted Co/Zn/Cd cation transporters |
|---|
| TIGRFAM ID | [TIGR01297] cation diffusion facilitator family transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCA CTGCCGAACA TTCCCGCCTG CTGCGTCTGG CGACACGGGC TTCGCTGGCG
GTTGCCGTGA CGCTGATTCT GGCCAAGGGC GTGGCCTGGT GGCTGAGCGG TTCGGTCAGT
CTGCTGGCCG GGCTGACGGA CTCGTTGCTC GATGGCGCGG CCTCGTTTCT TAATCTGCTG
GCGGTGCATT ACGCGCTGCG CCCTGCCGAC GATGATCATC GTTATGGTCA CGGCAAGGCG
GAAGCTCTGT CAGGCATGGC GCAGGCGCTG TTTATCACTG TCAGTGGCGT GCTTATTGCC
GTTCAGGCAG TCGAGCGCAT CCAGAACCCG GAGCCACTCG GCGCGCCGTT GTTGGGCATG
GTGGTGATGG TGATTTCCAT TGCGCTGACG CTCGCGCTGC TCAGCCTGCA ATACCGGGTG
ATCAAGGCGA CCGGCTCTGC AGCCATCCGT GCCGACTCGC TGCACTACCG CTCTGACCTG
CTGCTCAACG CAAGTATTCT GGTGGCCCTG ACCCTGGCGT ATTTCGGCTG GCAACAGCTG
GATGCCTATT TTGGCCTGGG CATCGCGCTG TACATACTCT GGAGCGCGCT GCAGATTGCC
CGCGAAACCG TGTCAGTGTT GATGGACGAA GAGCTGCCGG CCGATGTCAG CACGCGCATG
CTGGAACTGG CGCGCAGTGT GCCGGGCGTA CTCGGGGCGC ATGATCTGCG CACGCGGATT
TCCGGTAATC ACTGGTTTGT GCAATTGCAC CTGGAACTGC CGGGAACGCT GACCCTGTCA
GTGGCGCACG CACTCTGCGA TCAGGCCGCC GACGCTATTC ACGAGCAATT CCCGAAGGCC
GAAGTGCTGG TGCACGCCGA CCCTCAGGAA GTGGTCAGGC AGGCACACGC CTGA
|
|---|
| Protein sequence | MSTTAEHSRL LRLATRASLA VAVTLILAKG VAWWLSGSVS LLAGLTDSLL DGAASFLNLL
AVHYALRPAD DDHRYGHGKA EALSGMAQAL FITVSGVLIA VQAVERIQNP EPLGAPLLGM
VVMVISIALT LALLSLQYRV IKATGSAAIR ADSLHYRSDL LLNASILVAL TLAYFGWQQL
DAYFGLGIAL YILWSALQIA RETVSVLMDE ELPADVSTRM LELARSVPGV LGAHDLRTRI
SGNHWFVQLH LELPGTLTLS VAHALCDQAA DAIHEQFPKA EVLVHADPQE VVRQAHA
|
|---|
| |