| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4748 |
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| Symbol | |
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| ID | 1186431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5381679 |
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| End bp | 5383103 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637396070 |
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| Product | site-specific recombinase, phage integrase family |
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| Protein accession | NP_794484 |
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| Protein GI | 28871865 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.830448 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGTAT TAAACAGTCG TCGCCTCTAC TCCCTCCTGG GCGAATTCAA GATGTTCAGG
AGCTTCTCGA TCAATCAGGT CACCACAGTC GACGCCAGCA ACATGCCGTT CATGATCTGG
CCGAACGGGT CTCCCTGTAT CATTGGGAAC CTATATATTC AGTCCCTGCT CCATCGACCA
GGACGCTCGA ATGGATTGTC CAGAAAGGGC AGCAAAGGCG GAACAATGGC CGGCTATGCT
GCCAATGTGG GGCAATTGCT CAGGCGCTGC TACCGAGATC ACATTGACCC GATCCACCTA
ACAGATGGCA AATTTACTGA CTACATCGAT GAGCTGCGCG AAGAACCCTC TAGCAGCAAC
CCAGCACAGC CCAAGAAAAC AGAAAATGCC GTGATCGACA CAGGCAAGCG CTGGCTCGAT
TTTTTGGGAT TTGTGGGACG TTTCTACGGA AAGCCCGGCT TCGTTTCTCT CCAGGGAGCT
ATACGGGCAC GAGAGGAAAC GTACTACATC AAAACCCGTA GTGGTAAGCC GATTGCTCGC
ACATATATGT GGCATCACTC TTTCGGTAGC TATCACCGCA GCCACACACG AGATCCGATC
ACCGATGAAC AGATCAAGCT GCTGAAAGCT ACTATCCGCG TGCAGAAGGC CTCAGCATTC
GTGAAGGTTC GCAGGGCAAA CATTCTCGAC ATGCTCGCAG GTACAGGCGC GCGCAGAACA
GAAATCGCGC TGCTGAGGGT AGAGGATGTG AGAGCGGCAC TGGCCATGGA AGAGCCGATG
CTTCGCCTGA CTACACTCAA ACGTGAAGAC AAAGCTCAAC GGGTAATTCC TATGCTCCTA
TCGACCCTTG TGAAGCTGAA CCGTTACATA GAAGGCGAGC GACGCAAACT GATGCGGGAG
GTTTACAAGG ATGGTGAGGA TCACGGATTT GTCTTCGTCT CCTCCACCAC TGGCCGACCT
TTGTCTAGCG ATTCGATCTC CAACGAGGTG CGCGATTTGA GAAAGGCTGC CGGCATCGAG
TGCCAGATTT GCCCGCATAT GTTCAGACAT GCATTCATAA CGAAGCTCTT CGTAAGGTTC
GTCACGCGCC ACAAAATCAA CAACGCTGAT GAGTTTCGTC AAGCGCTCCT GGACACCAGC
ACCTTTCTCG CGGAAGTGGT CAGTTGGACG GGCCATATCG ACCCTATTTC GCTTGAGCGT
TACATCGACC TGGCTTTCCG GGACGTGACT AGCTACTCAG AAACCCTCAC CTCGGTACAC
ATGGTAATGG CCATGGATCA ATATTTTATT GAAGAAGAAG AGCTTGAGGC GCGGCTGGAA
GAGGGCATGC CTATTGTCGA ATATCGGCAA GCAAAGAAGG CTTTAAGAGA ATCATCCAAA
AAAGACATGG AGATTGCCAA GCGGCGTGAG TCAAGCCTGG GCTAG
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| Protein sequence | MDVLNSRRLY SLLGEFKMFR SFSINQVTTV DASNMPFMIW PNGSPCIIGN LYIQSLLHRP
GRSNGLSRKG SKGGTMAGYA ANVGQLLRRC YRDHIDPIHL TDGKFTDYID ELREEPSSSN
PAQPKKTENA VIDTGKRWLD FLGFVGRFYG KPGFVSLQGA IRAREETYYI KTRSGKPIAR
TYMWHHSFGS YHRSHTRDPI TDEQIKLLKA TIRVQKASAF VKVRRANILD MLAGTGARRT
EIALLRVEDV RAALAMEEPM LRLTTLKRED KAQRVIPMLL STLVKLNRYI EGERRKLMRE
VYKDGEDHGF VFVSSTTGRP LSSDSISNEV RDLRKAAGIE CQICPHMFRH AFITKLFVRF
VTRHKINNAD EFRQALLDTS TFLAEVVSWT GHIDPISLER YIDLAFRDVT SYSETLTSVH
MVMAMDQYFI EEEELEARLE EGMPIVEYRQ AKKALRESSK KDMEIAKRRE SSLG
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