| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4745 |
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| Symbol | |
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| ID | 1186428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5374442 |
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| End bp | 5376511 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637396067 |
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| Product | ATP-dependent helicase HrpB, putative |
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| Protein accession | NP_794481 |
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| Protein GI | 28871862 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.455139 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTTCGTG ACGACCAGCC GCTGAAGATT CTGCTGATGT CGGCAACGCT GGAAGGCGAG
CGACTGGCAG CGTTGCTGGA CGATGCACCA GTGGTACGCA GCGACGGGCG GATGTTTCCG
GTGACGATGC AGTGGGGGCG TCCTTTTCAG CCCGGTGAGT TTGTCGAACC GCGAGTCGTG
CAGACGGTGC TGGATGCGCT GGGCAGCGAG TCCGGCAGCC TGCTGGTCTT TCTGCCGGGG
CAGGCCGAGA TTCGTCGGGT CAACCAGCAT CTGGTGGAAG CGCTGGGCGA GCGCGCCGAT
ATTCTGCTCT GCCCGTTGCA TGGCGAACTG GACCTCAGTG CGCAGCGTGC GGCCATCGAA
CCGGCGCCCA AGGGCACGCG CAAGGTGGTG CTGGCGACCA ATATCGCGGA AACCAGCCTG
ACCATCGACG GCGTGCGTGT GGTGATTGAT GCCGGGCTGG CGCGAGTGCC GCGTTTCGAT
CCAGGCAGCG GCATGACGCG GCTTGAGACC CAGCGCATCT CCCGCGCCAG CGCCACTCAG
CGCGCCGGAC GGGCAGGGCG GCTGGAGCCA GGCGTGTGTT ACCGGCTGTG GTCCGAGGCG
CAACACGATC AACTGGCCGC TTATGGCGCG GCAGAAATTC TTCAGGCGGA CCTCGCCGGG
CTCGCACTGC AACTGGCGCG CTGGGGGGTT ACGCCTGCGC AACTGGTCTG GCTCGACGTG
CCGCCCGCAG CAGCTTATGC ACAGGCGCAG GACCTGCTGG TGCGGCTTGA GGCGCTGAGT
AATCAGCCAG GTCAGCCGCC AGCCCTGACG CCCCACGGTC AGGCGATGGC CGAGTTGCCT
GCCCATCCAC GTATCGCTCA TTTGCTATTG CGCGGCCATG CCTTGGGTCT GGGCGAACTG
GCCTGTGACG TGGCTGCGCT GTTGGGCGAA CACGACATCC TGCGCGGTGG CGGCGCGGAC
CTGCACAGCC GCCTGACCTT GCTGGCGGGC ACCGAGCGTG CTGCGCGTGG CGCACAGGGC
GGCGTGCAGC GGGCTAAACA GCTGGCACGG CAATATCGCG GATACCTGCG CGGCACTGCG
AAAAGCCCGG TCAGCGATCC CGATCATTCA CGCTGGCTGG GCGCTCTGCT GGCGCTGGCC
TACCCGGATC GCGTGGCACA ACAACGTCGC CCCGGCGGTG GTGAATATCG CTTGGCTAAC
GGTCGTGCGG CACTGTTTGC CGAGGCCGAC GCACTGATGA AACAGCCGTG GCTGGTCATC
GCAGATTTGG GCAGTCGCCA GGGCCAGCGC GAAGAACGCA TCTACCTTGC CACCGATTTC
GATCCGGCGC TGTTCGAGTC CGTGCTGGCC GAGCAGGTCA TCACCGTGGA CCAGATCGAC
TGGGACGAAC GCGAAGGCGT GTTCCGCGCC GAGCGACAGC GCAAAGCGGG CGAGCTGATC
ATCAGCCGCG AACCACTTAC TGGCCTCGAC GACGCAGCCC GCAGCCAGGC GCTGCTCGCA
CTGGTGCGTC GTAAAGGCCT GGAACTGCTG CCGTGGACGC CGGAACTGCG CCAGTGGCAA
GCGCGTGTCG CGCTGTTGCG CAGCCTCGAT ATCGACAAAA GCGCAACCAG CGAATGGCCC
GACCTGAGCG ACGCGCAACT GCTGGCGACA CTCGAAAACT GGCTGATGCC CTACCTGGGT
AAAGTCACCC GGCTCAGTCA TTTCAGCCAA CTCGACCTGT CATCCATCCT GCGCAACCTC
CTGCCGTGGC CTCTGCCGCA ACAACTGGAA GCACAGGCCC CGCAGACCAT CCAGGTGCCC
TCTGGCTCGA ACATCCGCAT CGACTACAGC GAACAGCCGC CGATTCTGTC TGTGCGGCTG
CAAGAGCTGT TTGGATTATC TGATACCCCG CGCATTGCCA ATGGGCGGCA GGTGCTGAAA
CTGCACTTGC TGTCCCCGGC GCGTCGTCCG GTGCAGGTTA CGCAGGACCT GGCTAACTTC
TGGCGGTCGA CTTACATTGA GGTGAAGAAG GATTTGAAGG GGCGCTATCC GAAGCTATCA
CGCAACGTTC ATCAATTGGC ATATGCGTGA
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| Protein sequence | MFRDDQPLKI LLMSATLEGE RLAALLDDAP VVRSDGRMFP VTMQWGRPFQ PGEFVEPRVV
QTVLDALGSE SGSLLVFLPG QAEIRRVNQH LVEALGERAD ILLCPLHGEL DLSAQRAAIE
PAPKGTRKVV LATNIAETSL TIDGVRVVID AGLARVPRFD PGSGMTRLET QRISRASATQ
RAGRAGRLEP GVCYRLWSEA QHDQLAAYGA AEILQADLAG LALQLARWGV TPAQLVWLDV
PPAAAYAQAQ DLLVRLEALS NQPGQPPALT PHGQAMAELP AHPRIAHLLL RGHALGLGEL
ACDVAALLGE HDILRGGGAD LHSRLTLLAG TERAARGAQG GVQRAKQLAR QYRGYLRGTA
KSPVSDPDHS RWLGALLALA YPDRVAQQRR PGGGEYRLAN GRAALFAEAD ALMKQPWLVI
ADLGSRQGQR EERIYLATDF DPALFESVLA EQVITVDQID WDEREGVFRA ERQRKAGELI
ISREPLTGLD DAARSQALLA LVRRKGLELL PWTPELRQWQ ARVALLRSLD IDKSATSEWP
DLSDAQLLAT LENWLMPYLG KVTRLSHFSQ LDLSSILRNL LPWPLPQQLE AQAPQTIQVP
SGSNIRIDYS EQPPILSVRL QELFGLSDTP RIANGRQVLK LHLLSPARRP VQVTQDLANF
WRSTYIEVKK DLKGRYPKLS RNVHQLAYA
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