| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4735 |
|---|
| Symbol | hrpB |
|---|
| ID | 1186418 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5362728 |
|---|
| End bp | 5365250 |
|---|
| Gene Length | 2523 bp |
|---|
| Protein Length | 840 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637396060 |
|---|
| Product | ATP-dependent helicase HrpB |
|---|
| Protein accession | NP_794474 |
|---|
| Protein GI | 28871855 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.784057 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCTC TGCCTATCGA CCTCGTTTTG CCAGACCTGC GAGAGGCGCT GGTCAACCGC
AATGAAGTGA TCCTTGAAGC GCCTCCAGGT GCGGGCAAGA CCACTCGAGT ACCTCTGGCG
CTGCTGAACG AATCTTGGCT TGGCGACCAG AAGATCTTGA TGCTCGAACC TCGGCGACTG
GCCGCTCGGG CCGCTGCTGA ACGCTTGGCG AGTGAATTGG GAGAGAAGGT TGGGGAAATT
GTCGGCTACC GCATTCGCCT TGAAAGCAAG GTAGGGCCGC GCACTAAGAT TGAAGTGGTC
ACGGAAGGTA TCCTGGCTCG CCGGCTCCAA GATGATCCTG CGCTGGATGG TGTTGGCGTG
GTCATCTTCG ACGAGTATCA CCTGCGCAAC CTGCACTCTG ACCTTGCACT GGCTCTTTGC
CTGAGTGGCC GTGACCTGCT ACGTGATGAC CCACCACTGA AACTGCTCCT GATGTCCGCA
ACGCTGGAGG GAGCTCGTCT TTCTAAGGTT TTGAACAATG CTCCTGTGAT CACCAGTGAA
GGCCGGATGT ATCCGGTCTC CACGATCTGG GGCAGCCCGT ATCAACCGGG TGAGCGTATC
GATGCGCGAG TTACGGACAC CTGCTTAGCC GCCATCAATG AGCAGCAGGG AAGCATCCTG
GTTTTCCTTC CTGGGCAGGC AGAGATTCGT CGAGTAGCCG ATTTTCTCGA AGAGCAACTC
AGCAACCGTT CAGACGTGAC CGTATGCCCG CTGTATGGAG ACCTTGATCT CAATGCCCAG
CGCGCCGCGA TAAATCCGGC ACCAACTGGC TCGCGGAAGA TCGTTCTGGC CACAAACATT
GCTGAGACCA GTTTGACCAT CGAAGGCGTA AGAGTGGTCG TGGACAGCGG CCTTGAGCGA
GTACCAAAAT TCGATCCTCG CAGTGGTATG ACTCGCCTCG ACACTCAGCG CATCTCGAAG
GCCAGCGCTA CTCAGCGTAT GGGGCGAGCA GGGCGCTTGG AGCCAGGTGT GTGCTATCGC
CTATGGTCGG AAACGCAACA CGAGCAAATA GCCGGCTACA GCACCCCTGA AATCCTGCAG
GCGGATCTCT CAGCCTTGGC ACTTCAGTTG GCCCGATGGG GAATGAAGCC AGAGGAAATG
ACTTGGCTCG ACCAACCTCC GTCAGCTCCC TTCGCCCAGG CCAGAGACCT GCTGAAGCGC
CTAGGCGCAC TCGATGCTGC TGGCCAGCTC ACATCGCACG GATCCGCCAT GAGCGAGCTT
CCAGCGCATC CACGGATCGC TCACCTTCTC ATCAAGGGCA ATGCGATGGG GCTGGATGAC
CTTGCGTGCA ACATTGCCGC GTTGCTGGGT GAGAAAGATA TCCTGCGCGG TGCAGGCGCC
GATCTTCACA CTAGGCTGAG TGCCTTGTCA GGCGAGCATT ACTCACGTCG AGGTGGTGGT
TCCTTCCAGC GGGTAAAACA GTCTGCTCGG CAGTATCGAT CCCTGCTGCG TGGGAGGGCC
GCCAGCCCTG TTAGTGAGCC CGATCACCTA AGGTGGGTAG GGTGCCTACT GGCATTCGCT
TACCCTGATC GAATCGGTCT CCAGAGGCGT GCGAATGCCT CTGACTACCG TCTCTCCAAC
GGGCGGGCTG CTGTGTTCTC AGAGCCTGAT GCTCTCACTA AACATGAGTG GCTAGTAGTG
GCCGATCTGG GTAGCCGGCA AGGGCAGCGC GAGGAGCGGG TCTACCTTGC GAGCGATCTC
GATCCTGCTT TGTTCGATGG CGAGCTGGCT GACCTTGTAG GGTCAGTCGA TGAGGTTGAC
TGGGACGAGA GGGAGGGGGT ACTCAAGGCT GAGCGGCAGC TAAAGGTGGG GCAGTTGGTA
CTGTCCGCAA CACCTTTGCC AAGCCTTGAT GAGCAAGCTC GTTCGCTAGC CTTGGTCAAT
CTGGTGAGGC GCAAAGGCAT CGAACTTCTG CCTTGGAACC CTGAGTTGCG CCAGTGGCAA
GCGCGGGTTG ATATGCTGCG TCAGCTGGAT ATCCAAAATG GCCAAGCAGA AAGCAAGTGG
CCTGATCTCA GCGATACCAG CCTTCTAGAA ACGCTGGAAA AGTGGCTCGC ACCGTACTTG
GGCAAAGTCA CGAGGCTCAG CCACTTCAGC CACCTGGATC TGTCATCGAT TGTCATAAAT
CTTCTGTCTT GGCCGCTTCC ACAGGAGTTG GAGACTCAGG CACCTCTGAC CATCCAGGTG
CCGTCTGGGT CGAATATCCG AATCGACTAT TCGCAGCATC CTCCGATCTT GGCTGTGAGG
CTGCAGGAGC TTTTTGGTCT GTCAGATACA CCTCGGATTG CCCAAGGTAA ACAGCTCCTG
ACGTTGCATC TTTTGTCGCC GGCGCGGAGG CCTGTACAGG TCACCCAAGA TCTAGCCAAT
TTCTGGCGCA GCACCTACGT GGAAGTGAAG AAGGATCTTA AAGGCAGATA CCCAAGACAC
TACTGGCCCG AAGATCCATT AGTGGCTGAG GCGACGGCCA ACGCCAAGCC CCGAAAGTCC
TGA
|
|---|
| Protein sequence | MISLPIDLVL PDLREALVNR NEVILEAPPG AGKTTRVPLA LLNESWLGDQ KILMLEPRRL
AARAAAERLA SELGEKVGEI VGYRIRLESK VGPRTKIEVV TEGILARRLQ DDPALDGVGV
VIFDEYHLRN LHSDLALALC LSGRDLLRDD PPLKLLLMSA TLEGARLSKV LNNAPVITSE
GRMYPVSTIW GSPYQPGERI DARVTDTCLA AINEQQGSIL VFLPGQAEIR RVADFLEEQL
SNRSDVTVCP LYGDLDLNAQ RAAINPAPTG SRKIVLATNI AETSLTIEGV RVVVDSGLER
VPKFDPRSGM TRLDTQRISK ASATQRMGRA GRLEPGVCYR LWSETQHEQI AGYSTPEILQ
ADLSALALQL ARWGMKPEEM TWLDQPPSAP FAQARDLLKR LGALDAAGQL TSHGSAMSEL
PAHPRIAHLL IKGNAMGLDD LACNIAALLG EKDILRGAGA DLHTRLSALS GEHYSRRGGG
SFQRVKQSAR QYRSLLRGRA ASPVSEPDHL RWVGCLLAFA YPDRIGLQRR ANASDYRLSN
GRAAVFSEPD ALTKHEWLVV ADLGSRQGQR EERVYLASDL DPALFDGELA DLVGSVDEVD
WDEREGVLKA ERQLKVGQLV LSATPLPSLD EQARSLALVN LVRRKGIELL PWNPELRQWQ
ARVDMLRQLD IQNGQAESKW PDLSDTSLLE TLEKWLAPYL GKVTRLSHFS HLDLSSIVIN
LLSWPLPQEL ETQAPLTIQV PSGSNIRIDY SQHPPILAVR LQELFGLSDT PRIAQGKQLL
TLHLLSPARR PVQVTQDLAN FWRSTYVEVK KDLKGRYPRH YWPEDPLVAE ATANAKPRKS
|
|---|
| |