Gene PSPTO_4724 details

Gene Information

• Locus tag: PSPTO_4724
• Symbol: hopD
• ID: 1186407
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 5350102
• End bp: 5350647
• Gene Length: 546 bp
• Protein Length: 181 aa
• Translation table: 11
• GC content: 52%
• Product: type III effector HopD
• Protein accession: YP_784364
• Protein GI: 115532025

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.543732
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCCTC TACAATCTAC TCAACACAGC ATTACAACTC CCCTAATCAG TGGCGGTCGG 
CCATTAGACG CTGTGGGCCC TCAGGCCCAG CAATCTCACC CTAAAAGGAT TTCACCCTCT 
CAATTGAGCC CAGGCGCTCA CCAGGCTCTA AAACGCCCTT CAGCTAATGC CGAACACCAA 
CGCATTGCAT CACTGGTACG CAACGCTCTG CAGGATGGCA CACTTCAATT TCAATCCAGT 
AACGACAAGC AAGTAACCTA TAAAGCGCCA GTATGCCTGC CAGCTGACAC CAGCACCGAT 
ACCGATACCG ATACCGTGAG AACCGAACGC TTGATTAATA ACGAGCTGAC GGTTCAGGCC 
CGATTAAATG ATCAATCGGA GTACGACATC GTCAGTGCCC ATTTGCATGG CTCTTCGAGA 
TCCATATCCT TCGATGTGCC CAGCCCACCG CCTGCACATG GCTCAGCATC TTCAGCCTTG 
AGTGAACGGA CCCATCTAGG GAGGCGCTGC AAAAATAGCC AACTGTCCCC ACCCTTGGCA 
CACTAA 

 

Protein sequence

MNPLQSTQHS ITTPLISGGR PLDAVGPQAQ QSHPKRISPS QLSPGAHQAL KRPSANAEHQ 
RIASLVRNAL QDGTLQFQSS NDKQVTYKAP VCLPADTSTD TDTDTVRTER LINNELTVQA 
RLNDQSEYDI VSAHLHGSSR SISFDVPSPP PAHGSASSAL SERTHLGRRC KNSQLSPPLA 
H