| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4650 |
|---|
| Symbol | |
|---|
| ID | 1186333 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5252337 |
|---|
| End bp | 5254538 |
|---|
| Gene Length | 2202 bp |
|---|
| Protein Length | 733 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637395987 |
|---|
| Product | aldehyde oxidase and xanthine dehydrogenase family protein |
|---|
| Protein accession | NP_794401 |
|---|
| Protein GI | 28871782 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1529] Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAGC CATTTTCGCC AATGGGCAAA CCCGTGGACC GCGTTGACGG CCGACTGAAA
GTAACCGGCG GCGCACGTTA CGCCGGGGAG TACCCAGAAG AAGGCCTGCT GCACGGCAGC
GTGGTCTCCA GCACCATCGC CAAGGGGCGC GTGCTCAGCA TTGATATCAG CGAAGCGCTG
AAAGTGCCCG GCGTTGTGGC GGTGCTCGAT CACAGCAATC GCCCGGCGCT GGCCAGCTAC
GACGAGAATT ACGAAGACGC CGACTCGGCG GATGGTTCGC CGTTTCGCCC GCTGTATAAC
GACAACGTGC TGTACAGCGG TCAGCCGCTC GCGCTGGTGG TGGCCGAGAC GCTTGAACTG
GCGCGGCATG CCGGTTCGCT GGTGCGTATC GAGTACGAAC AGGCGCCCCA CGAGACCGAT
CTGCAGGCCA TGCTCGACAC AGCCTACAAC GCGCCTGCAG AACTGCCACC ACCGCGTGGC
AATTTCGAGG GCGAGCTGGC AAGTTCGGCG CTGAGTGTCG ATGTGACCTA CAGCACGCCC
AGCGAATACC ACAACCCGAT GGAACCGCAC GCATCGACCG TTCTGTATCA GGCAGACGGC
GGCTTGCAGA TTCATGACAA GACCCAAGGC CCGCAGAACT GTCAGGACTA CCTGCACAAG
GTTTTCGGCC TGGAGAAGGA CAAGATTCGC GTACTGGCCG CGTTTGTCGG CGGTGCTTTC
GGTTCTGGCC TGCGTCCGCA GTATCAACTG CCTCTGGCGG TTATGGCCGC GCTGCACCTG
AAACGCTCGG TGCGCCTGAC CCTGACCCGC CAGCAGATGT TCACCTTTGG TTATCGCCCG
CGCACGGTTC AGCGCTTGCG TCTGGGCGCT GCTGCCAATG GTCGTCTGCT GGCCGTAGGG
CACGAAGCCA TCGGCCAGAC CTCGCGTTTC GAGGATTTCA GCGAGCACGT CGTGGAATGG
AGCGGCATGC TTTATCACTG CGACAACGTG CAACTGACCT ACAAGCTGGT GCCGCTGGAT
GTATTCACGC CGCTGGACAT GCGCGCGCCG GGCGCCGCAT TGGGGATGAT CGGTCTGGAA
TGCGCGATGG ACGAACTGGC CTGCGCGCTG GCCATCGATC CGGTGCGCCT GCGACTGACC
AACTACGCCG AGCGTAATGG CAACGAAGAC AAGCCGTATT CCAGCAAGGA ACTGCGCGAG
TGTTACAGCC AGGGCGCCGA GCGTTTTGGC TGGGAGCGCC GCAATCCTGA ACCGCGCAGC
ATGCGTCAGG GTCGCCAACT GGTCGGCTGG GGCATGGCGG GCGGTGTATG GGAAGCGATG
CAGATGAAAG CCAGCGCCAA GGCGCGTCTT GAAGCGGATG GCTCGCTGGT GGTCAGCAGC
GCCACGACCG ACATCGGCAC GGGTACGTAC ACCGTGATGA CGCAGATTGC GGCCGAGTCT
GCAGGTATTG ATGTCGAGAA CGTCACCTTC CTGCTGGGCG ACTCTTCATT GCCGACCGCG
CCGTTGCAGG GCGGCTCGTT TACAGTGTCG TCGGTGGGCA CGGCGGTGCA ACAGGCGTGT
CAGGCCTTGC AGCGTCAGGT GCTGGAAGTG GCCAAAGGGC TGCATCCGCA GTTTGCGTCT
GTTACGCCGG ATGAAGCTCG CTTTGAATCA GGCAAGCTGT ACCTTGGCGA TCAGGTGTTG
TCGATGGCAG ACCTGGCGGC GTCTCAGGCC AGCGGCGTGA TTGAGGTACA AGTGGACGCC
GAGCCGGACA AGAAGCGCGA AGCCTACGCA GCGGCGACGC ACTCGGCGGT GTTCGTCGAG
GTGCTGGTTG ATGAGGACCT GGGCACCATC AAGGTCAGCC GTGTGGTCAG CGCTGTGGCG
GCGGGCCGTG TGGTCAATCC GAAGATGGCA CGCAGCCAGA TTCTTGGTGG CGTTGTCTGG
GGCATGGGCA TGGCACTGCA GGAAGAAGCT CTGCTGGACC ACGCACTGGG CCGCCCGATG
AACCACAGCC TGGCCGAGTA CCACGTTCCG GTGAACGCAG ACATCGGCGA CATCGACGTG
CTGTTTGTCG AAGAACATGA CGAGATCGTC AACGCGCTGG GCTCCAAGGG CGTGGGCGAA
ATCGGCATCG TCGGTGTCCC GGCAGCGATT GCCAACGCCA TCTACCACGC AACGGGTAAA
CGGATACGCG AGTTTCCGAT AACGCTGGAT AAGTTGTTGT AG
|
|---|
| Protein sequence | MNQPFSPMGK PVDRVDGRLK VTGGARYAGE YPEEGLLHGS VVSSTIAKGR VLSIDISEAL
KVPGVVAVLD HSNRPALASY DENYEDADSA DGSPFRPLYN DNVLYSGQPL ALVVAETLEL
ARHAGSLVRI EYEQAPHETD LQAMLDTAYN APAELPPPRG NFEGELASSA LSVDVTYSTP
SEYHNPMEPH ASTVLYQADG GLQIHDKTQG PQNCQDYLHK VFGLEKDKIR VLAAFVGGAF
GSGLRPQYQL PLAVMAALHL KRSVRLTLTR QQMFTFGYRP RTVQRLRLGA AANGRLLAVG
HEAIGQTSRF EDFSEHVVEW SGMLYHCDNV QLTYKLVPLD VFTPLDMRAP GAALGMIGLE
CAMDELACAL AIDPVRLRLT NYAERNGNED KPYSSKELRE CYSQGAERFG WERRNPEPRS
MRQGRQLVGW GMAGGVWEAM QMKASAKARL EADGSLVVSS ATTDIGTGTY TVMTQIAAES
AGIDVENVTF LLGDSSLPTA PLQGGSFTVS SVGTAVQQAC QALQRQVLEV AKGLHPQFAS
VTPDEARFES GKLYLGDQVL SMADLAASQA SGVIEVQVDA EPDKKREAYA AATHSAVFVE
VLVDEDLGTI KVSRVVSAVA AGRVVNPKMA RSQILGGVVW GMGMALQEEA LLDHALGRPM
NHSLAEYHVP VNADIGDIDV LFVEEHDEIV NALGSKGVGE IGIVGVPAAI ANAIYHATGK
RIREFPITLD KLL
|
|---|
| |